RNA id: TU205129


Basic Information

Item Value
RNA id TU205129
length 566
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G173268
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28865913 ~ 28866675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAATGATGAGACACTAAAACACAGTTTATTGTGATATGAAACTTTAATTGTGGCACATGGCTATAATGGAGATGTAaacattgtctctctctctctctctctctctctctctcacacacacacacacacacacacacgggtaaGGGTAACACTGATCCATCAGGCAGCAGTCAGAGCGGAgtgtatttacagaaaacatgtaGAAAACTTTCAACTAAAAATATGATCAGAAAAATAACATCtgtaataatgaaaatgaggagcatcacacactctgtctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacactcacaggttGTGGAACAGTGTTGGTGAACACATGGTGCGGTTCTCCGGGTTCTCTCAGGCGTGTTTGATGGTGTATTTGCCTTTCTGCAGCTGCGAGATGTAAAGCTTCGACTTGCTGCCGTCCGAACGCTTAAACCAAACTTCATCATGATTTATAGTCGTTATTATCGCActgtgggggagagagagagagagagagagagagagagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205162 lncRNA downstream 1746 28862908 ~ 28864167 (-) True G173289
TU205147 lncRNA downstream 3305 28862052 ~ 28862608 (-) False G173282
TU205149 lncRNA downstream 3305 28862052 ~ 28862608 (-) True G173282
TU205145 lncRNA downstream 4044 28861401 ~ 28861869 (-) False G173282
TU205122 lncRNA downstream 30789 28798168 ~ 28835124 (-) False ralgapa1
TU205165 lncRNA upstream 4795 28871470 ~ 28871955 (-) True G173292
TU205166 lncRNA upstream 6768 28873443 ~ 28874318 (-) True G173293
TU205103 lncRNA upstream 67285 28933960 ~ 28985241 (-) True G173260
TU205104 lncRNA upstream 67285 28933960 ~ 28983936 (-) False G173260
TU205105 lncRNA upstream 67285 28933960 ~ 28984061 (-) False G173260
XM_034308073.1 mRNA downstream 5902 28798149 ~ 28860011 (-) False ralgapa1
XM_034308077.1 mRNA upstream 996 28867671 ~ 28877881 (-) True lrrc57
XM_034308308.1 mRNA upstream 15577 28882252 ~ 28885109 (-) True il17a/f2
XM_026925987.2 mRNA upstream 34229 28900904 ~ 28908552 (-) False stmn4l
XM_034307776.1 mRNA upstream 49701 28916376 ~ 28928895 (-) True gpn1
XM_034307851.1 mRNA upstream 120684 28987359 ~ 28996157 (-) True khk
TU204662 other downstream 953369 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 955023 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 955023 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 3283386 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 3606551 25258839 ~ 25259362 (-) True G171569
XR_004578919.1 other upstream 34229 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 34229 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 34229 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 34229 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 369244 29235919 ~ 29239270 (-) True G173434

Expression Profile