RNA id: TU205160


Basic Information

Item Value
RNA id TU205160
length 1452
lncRNA type inter_gene
GC content 0.52
exon number 5
gene id G173288
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29078414 ~ 29080610 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCCCCTGTGTAGATGCGTGCTCGGCGGGGCAGTGTgtactcggtgtgtgtgtgtgaacactgcGGTTCGTCAAGCGGAGACTGTGCAGGCGGATCCTCCAGCGGACTCCAATAACTCTGTTCACACATCCCTCTGAGCAGGATCTCCGCCAGCTGACGCGCTAtggtctaaacacacacacacacacacacacacaccaaacacgcacacacacaccaaacacgcacacacacaccaaacattctcataaggacagaaagaaacagacagataaagagacagaaagagagagagacagagggagggagaggtgacagacagagagagagagagagacagagagggagggagagagagggagggagaggtgACAGACAGCTGTACTCTAATACACAGGAAACGAAACTACTGCAGACTAAAACATCTCGCCACAGGTCATTCCTGTAATCTCTCCTTCCAGGACCTGGAcctaagccccgccccctgacTAAATGCTGCATGGTGATTGGCTGGCAGGAGAAGACAGTGGTGCACTTGTACTGTTCACTATTACTGCTGCCTTACATGATGGACAGCTTGCAAACAGCCAAGAACCCTCTCCTGATCGACACTCCAAGTTCATGCTCCAGTGTTCCTCAGAAGCAGGAGAACTGGACCATGATGAAGCTGTAGAACATCACCACCAACACTACAGCCACTATCAGATGTTCTTCACCTTGTGCTTCGGTCGTCCATTCCTGCTGTTCTGACCATCAGATATCTTCATTCTCCGTCTTTCTGCCATGTGTCTGTCTCCTCACACTCACTGGCCAAAAGATCACATCACTGAGATGTCACCACACACCCGACTGGGggaactctcacacacacacccgaccgggggaacacacacacacacccgaccGGGggaactctcacacacCCGCCCACACTCCCACTGCTTCATCTCACCAAACACTTAGTACCTACATCTCCTGGGTCAGAGCAGCAGGACGGACAAACGGGTTAAAGGTCAGAAGCCTCTGACTATAAAGAGCACTTCACCAGACCCGTGTCCCTGATGGTACCAAAAATAAGAGATCAGGGTTCTGACCTGGTTGCTGTAGGTAATGTGGATCCTGATTCATTCAGGAACACCACGACAGAACTTAGCTTTCAGTACCACTGGGCCACCTGGAGGTCCGGAGGATGCAGCCACGTGCACGTTCCCCATCATCACGTGGCTCCTGTTTGTTTCTTGGTGAGAGCGACACGTTCTGTGTCCCGACCAACATGTAATTCCTGCACACCTCGGCAtataaagaaacacacacacacacacacacacacacactgaccatacGAAGGTTCTGTGTGGTTCTCGTTTCCACAGCACGGAGAATCTCTCGAAACCGTCCGACACCACACGTCAgattactgaaacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205228 lncRNA downstream 1117 29076263 ~ 29077297 (-) True G173339
TU205226 lncRNA downstream 6989 29070035 ~ 29071425 (-) True G173338
TU205107 lncRNA downstream 63485 29014349 ~ 29014929 (-) True G173262
TU205103 lncRNA downstream 93173 28933960 ~ 28985241 (-) True G173260
TU205240 lncRNA upstream 27266 29107876 ~ 29108297 (-) True G173349
TU205241 lncRNA upstream 27266 29107876 ~ 29108297 (-) False G173349
TU205336 lncRNA upstream 151003 29231613 ~ 29231919 (-) True G173431
TU205340 lncRNA upstream 153324 29233934 ~ 29234260 (-) True G173433
TU205342 lncRNA upstream 159309 29239919 ~ 29241615 (-) True G173435
XM_034308219.1 mRNA downstream 2947 29072704 ~ 29075467 (-) True mrpl57
XM_034308220.1 mRNA downstream 3621 29072704 ~ 29074793 (-) False mrpl57
XM_034307851.1 mRNA downstream 82257 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA downstream 82258 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA downstream 82259 28987359 ~ 28996155 (-) False khk
XM_034308210.1 mRNA upstream 8562 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA upstream 8624 29089234 ~ 29091389 (-) False calm1a
XM_034308295.1 mRNA upstream 37763 29118373 ~ 29130728 (-) True ndnfl
XM_034308366.1 mRNA upstream 57410 29138020 ~ 29146605 (-) True LOC113525666
XM_034307914.1 mRNA upstream 165359 29245969 ~ 29329065 (-) True smyd3
TU205159 other downstream 28388 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other downstream 169862 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 169862 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 169862 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 169862 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 155309 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 246316 29326926 ~ 29329076 (-) False smyd3

Expression Profile