RNA id: TU205162


Basic Information

Item Value
RNA id TU205162
length 1213
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G173289
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28862908 ~ 28864167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCGCACGCACGCacacacacgcacacagacgcacatcaccattattatttaatcatcaaaaaacacttcacacaaatacaacacattATTGTGTATCTGTATTATTGTGTATCGTGTCTTtatatacacaataaacactgagtgatgaagcagttactgtcACCTCCACgacgttgattagtttcctataacagcatgtccccgactgttttattcctcttacacctcaGCTCTTTACCAACacttacaattttttatttattaaagaacaacataacactcgttccctcacctgcgtctctttattctctctcttcaagttaataagacaaaaataaagacgcagcttgttccgcatgttactgagaaaccgcaaagaagcgtaaactcctccgtcctgaagacgtcgcaaaacttacagttacagctttaccttacaaagcgctgacactggagactccttccatcaatgttaactAAACGTacaatctccttacagaaaacgttcgctgtacacgtccctgtgaacgagctgttactatagaaacgataacgtatcagaacgagcgcattaatataaacctgcgctactgtcagagctgctgttatagagaattaatcaacacctgacgaccaatcagagtgcagaactcagcagcagtgaggtgTTACCAGCGACTTTAGTTCTGATCTGCATGTTCTCCTGCAGGTTTGCCAGAGGTTCCAGGTACTCGGGCGCTTTTCCTGAGATCACTTCCTGTAGTTTAGCGTCAACCTGACTCAACCGCTCCTTAtacagcctgaaacacacacacacacacacacacacactgatcacactctgtttataattaacacACTGATCTGTCAGGCTGCTGGTGTTTAACAGTTCAGGCTCTGACTAGTTACACAGCAGGAAAGTCAGAGCCGTGAAACCTGATCATCTCAGAGCTTTGAAATGTTCTGTATCTTGTTAGTGCTCTTGTAAACGCTAACGCTAACGCAGCGGGAGCTACAGCGCCGCGGGGGCGGAGCAGACGGTACAGGAAGTGGACGAGGGCGTGTTTAATAGGAATAGAACGAGGCTTCAGATTCGAGTACGCACTGATCCTTCAGGTCTGTAAACTGCTTCTCCAGGTTCGTCATCTCATCCAGACATTCCAGCCGTCTCCTCTCACAGTCCTCATCGtccatctctacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205147 lncRNA downstream 300 28862052 ~ 28862608 (-) False G173282
TU205149 lncRNA downstream 300 28862052 ~ 28862608 (-) True G173282
TU205145 lncRNA downstream 1039 28861401 ~ 28861869 (-) False G173282
TU205122 lncRNA downstream 27784 28798168 ~ 28835124 (-) False ralgapa1
TU205124 lncRNA downstream 48713 28798168 ~ 28814195 (-) False ralgapa1
TU205129 lncRNA upstream 1746 28865913 ~ 28866675 (-) True G173268
TU205165 lncRNA upstream 7303 28871470 ~ 28871955 (-) True G173292
TU205166 lncRNA upstream 9276 28873443 ~ 28874318 (-) True G173293
TU205103 lncRNA upstream 69793 28933960 ~ 28985241 (-) True G173260
TU205104 lncRNA upstream 69793 28933960 ~ 28983936 (-) False G173260
XM_034308073.1 mRNA downstream 2897 28798149 ~ 28860011 (-) False ralgapa1
XM_034308077.1 mRNA upstream 3504 28867671 ~ 28877881 (-) True lrrc57
XM_034308308.1 mRNA upstream 18085 28882252 ~ 28885109 (-) True il17a/f2
XM_026925987.2 mRNA upstream 36737 28900904 ~ 28908552 (-) False stmn4l
XM_034307776.1 mRNA upstream 52209 28916376 ~ 28928895 (-) True gpn1
XM_034307851.1 mRNA upstream 123192 28987359 ~ 28996157 (-) True khk
TU204662 other downstream 950364 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 952018 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 952018 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 3280381 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 3603546 25258839 ~ 25259362 (-) True G171569
XR_004578919.1 other upstream 36737 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 36737 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 36737 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 36737 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 371752 29235919 ~ 29239270 (-) True G173434

Expression Profile