RNA id: TU205226


Basic Information

Item Value
RNA id TU205226
length 814
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G173338
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29070035 ~ 29071425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtctctgtgtgtgtgtgtgtgtctgtgtgtgtgtatgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgcgtctcaCTCAGTGTGAATGTTTTTACAGCCTTAGATGAAAGATGAAGAGTGTTGAGTTTAATTCCATCCTGTTCTTTAATTATTTGCTCAGAAGGAataaacaggtttatattaatgcatgtgttctaataagttatcgtttctatagtaacagctcattcacaggggcgtTTACGCTCCACGCAATCTAAGacaaataatgaacatttaaaaCCGTGTTTCTGtagggagatgtttatttttaatgtctatggaaggagtctccagtgccagtgatTTGCAACTccacggtctggagtgtgttactCCCTACATCATACTAACAACACCGCttaatattattaacaattaAAGATCTAATAGTCTAATCTtcacatttataaacacacacacacacacacacttctgctgtCACTGTGTTCATCGTTCATCGTCACATAGCGCCCCCTACTGACACACACCTGATAACAGGCAGGCTTCATATTCATTTCTGCACTTTTTAACTTTAGCCTGAACGAAGTCTCGCGAGATTTAAGCTGAGGGTCTTTTGGCTCTCGCGAGAATACcgctgtgtgtttctgtatccTAGCAACCGGAGTGCGGGTCATGGCGGAGGATAAACACTCGGCAGgagctGCAGCGGCGCTGAACAGGAGGATCAGCGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205107 lncRNA downstream 55106 29014349 ~ 29014929 (-) True G173262
TU205103 lncRNA downstream 84794 28933960 ~ 28985241 (-) True G173260
TU205105 lncRNA downstream 85974 28933960 ~ 28984061 (-) False G173260
TU205104 lncRNA downstream 86099 28933960 ~ 28983936 (-) False G173260
TU205166 lncRNA downstream 195717 28873443 ~ 28874318 (-) True G173293
TU205228 lncRNA upstream 4838 29076263 ~ 29077297 (-) True G173339
TU205160 lncRNA upstream 6989 29078414 ~ 29080610 (-) True G173288
TU205240 lncRNA upstream 36451 29107876 ~ 29108297 (-) True G173349
TU205241 lncRNA upstream 36451 29107876 ~ 29108297 (-) False G173349
TU205336 lncRNA upstream 160188 29231613 ~ 29231919 (-) True G173431
XM_034307851.1 mRNA downstream 73878 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA downstream 73879 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA downstream 73880 28987359 ~ 28996155 (-) False khk
XM_034307776.1 mRNA downstream 141140 28916376 ~ 28928895 (-) True gpn1
XM_026925987.2 mRNA downstream 161483 28900904 ~ 28908552 (-) False stmn4l
XM_034308219.1 mRNA upstream 1279 29072704 ~ 29075467 (-) True mrpl57
XM_034308220.1 mRNA upstream 1279 29072704 ~ 29074793 (-) False mrpl57
XM_034308210.1 mRNA upstream 17747 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA upstream 17809 29089234 ~ 29091389 (-) False calm1a
XM_034308295.1 mRNA upstream 46948 29118373 ~ 29130728 (-) True ndnfl
TU205159 other downstream 20009 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other downstream 161483 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 161483 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 161483 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 161483 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 164494 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 255501 29326926 ~ 29329076 (-) False smyd3

Expression Profile