RNA id: TU205241


Basic Information

Item Value
RNA id TU205241
length 355
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G173349
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29107876 ~ 29108297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactactgTGCGGTGTGCTCCggggcagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactactGTGTGGTGTGCTCCGGGGCAGTGGTGTGTCGCTGCCGCAGAGGAAGACCATGAACCACAATCAGCTCATTCAGAGTGTGATGCTGCACTGCTGCTGATCCTGCACACACTCGACTGGGctgggagacagagagagagagagagacagagacagagagacagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205160 lncRNA downstream 27266 29078414 ~ 29080610 (-) True G173288
TU205228 lncRNA downstream 30579 29076263 ~ 29077297 (-) True G173339
TU205226 lncRNA downstream 36451 29070035 ~ 29071425 (-) True G173338
TU205107 lncRNA downstream 92947 29014349 ~ 29014929 (-) True G173262
TU205105 lncRNA downstream 123815 28933960 ~ 28984061 (-) False G173260
TU205336 lncRNA upstream 123316 29231613 ~ 29231919 (-) True G173431
TU205340 lncRNA upstream 125637 29233934 ~ 29234260 (-) True G173433
TU205342 lncRNA upstream 131622 29239919 ~ 29241615 (-) True G173435
TU205345 lncRNA upstream 133803 29242100 ~ 29243390 (-) True G173437
TU205346 lncRNA upstream 133803 29242100 ~ 29243308 (-) False G173437
XM_034308210.1 mRNA downstream 15653 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA downstream 16487 29089234 ~ 29091389 (-) False calm1a
XM_034308219.1 mRNA downstream 32409 29072704 ~ 29075467 (-) True mrpl57
XM_034308220.1 mRNA downstream 33083 29072704 ~ 29074793 (-) False mrpl57
XM_034307850.1 mRNA downstream 111720 28987359 ~ 28996156 (-) False khk
XM_034308295.1 mRNA upstream 10076 29118373 ~ 29130728 (-) True ndnfl
XM_034308366.1 mRNA upstream 29723 29138020 ~ 29146605 (-) True LOC113525666
XM_034307914.1 mRNA upstream 137672 29245969 ~ 29329065 (-) True smyd3
TU205159 other downstream 57850 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other downstream 199324 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 199324 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 199324 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 199324 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 127622 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 218629 29326926 ~ 29329076 (-) False smyd3

Expression Profile