RNA id: TU205312


Basic Information

Item Value
RNA id TU205312
length 901
lncRNA type intronic
GC content 0.38
exon number 3
gene id G173408
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29354125 ~ 29357731 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAATAAttatatatgtgtttatatatactgtatatatgtatttatgtatctatgtatatatagtatagtgtatagtgatgtataatGGTAATAATTACACAATGATTAGTACACTGATGTAATTATCAAGGTTTATTGCAACATATAGCGGCGTATAGCGTTGTATAGCGGCGTATAGAGGCGTATAGAGGTGTATAGTGGCGTATAGTGGTGTATTATGatgtatagtggtgtatagtggCGTATAGTGAtttatagtgatgtatagctgtgtatagtggtgtatagtggCGTATAGCGGTGTATTATGATGTGTAGCGGTGTATAGTGGcgtatagcggtgtatagtgatgatgtagcggtgtatagtgatgtatagcggtgtatagtggtgtatagtggCGTATAGTGgcgtatagtgatgtatagcagtgtatagcggtgtatagtgatgtatagtgatgtatagtgatgtatagcggtgtatagtggtgtatagtggCGTATAGTGGTGTATTATGATGTGTAGCggtgtatagcggtgtatagtggtgtatagtggtgtatagtggcgtatagtggtgtatagtggcgtatagtgatgtatagtgatgtattatgatgtatagtggtgtatagcggtgtatagtgatgtatagcggCGTATAGAGGCGTATAGTGGCGTATAGTGGTGTATTATGatgtatagtggtgtatagcggtgtatagtgatgtatagcggtgtattatgatgtatagcggtgtatagtgatgtatagcggtgtatagcggtgtatagtgatgtatagcggtgtatagcggtgtatagtgatgtatagcggtgtatagtgatgtatagtgatgtatagcgaTGTATAGTGGcgtatagcggtgtatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205283 lncRNA upstream 49712 29275962 ~ 29304413 (+) True G173386
TU205271 lncRNA upstream 108560 29245343 ~ 29245565 (+) True G173374
TU205270 lncRNA upstream 109164 29244073 ~ 29244961 (+) True G173373
TU205268 lncRNA upstream 132476 29221053 ~ 29221649 (+) True G173371
XR_004578993.1 lncRNA upstream 181030 29168834 ~ 29173095 (+) False LOC117598323
XM_034307786.1 mRNA upstream 9488 29332256 ~ 29344637 (+) True tfb2m
XM_026912078.2 mRNA upstream 110769 29175671 ~ 29243356 (+) True kif26ba
XM_026912079.2 mRNA upstream 110769 29175671 ~ 29243356 (+) False kif26ba
XM_034307894.1 mRNA upstream 196577 29151195 ~ 29157548 (+) False LOC117598241
XM_034308114.1 mRNA downstream 2278 29360009 ~ 29368790 (+) True LOC113525415
XM_034308251.1 mRNA downstream 12201 29369932 ~ 29376033 (+) True LOC117595705
TU205058 other upstream 215349 29093491 ~ 29138776 (+) False nrde2
TU205054 other upstream 281036 29069720 ~ 29073089 (+) True G173221
trnak-uuu_7 other upstream 1628846 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403450.2 other upstream 1888476 27156343 ~ 27465649 (+) False nrxn3a

Expression Profile