RNA id: TU205341


Basic Information

Item Value
RNA id TU205341
length 3352
RNA type TUCP
GC content 0.49
exon number 1
gene id G173434
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29235919 ~ 29239270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttctttgcattttttagACTCCTCCGTCCACtaactgagctgctgttatcaCTCATAGAGTCCTGAGCAGAAGACGCGCTTCCTGTGGCCTCGCTGTCACGTATCATGCTCTCGTAGCCACTGCTGCCCCCACTGTGGTAGAAGAGGGCAGTTTTCCCCATGGCTGGAGGCAGCTCTCCACTCAGAACGCTGCTGTTGTCACTAGCGTGGCCGCTGCTGCAGCGATGTGGCCTCCGTGGAGCAGTGATCTTACTGTAAGGGGATGGTAAAGTATGGACCACTTGCCTTTCCTCACCCTGGACTGGTCCTCCTTTTTCCTCAGTATTGCATGTACCTCGTCCGTGACCGGCCTGGCCAGCACTGCCCTGCAGAAGTTCTGAGATTCGTCCGTTTACAGCTCTAAGAGGCAGCTTCGAGGCAAGTCCTGATCCCCTGTTGCGGCTCAGTGATTGAGTTGACCAGGAATTTGGGTTTGGGTTCTTTCCATTAGGGGACAGGCTGGAGCTCCTGTTTACGGATTGTGGAAGAGATTTGGTGGAGAAGCTCAAGGTCTTGGTGCTAGACGTGGAAAGGCTTCGAGACTTAGGACTGGCCATGAGGAGTTTGGTAACAGCTGAGATTTTGGATTGGCCTGATTTGGGTGACTGTGTTACACTGGAGTTGCAGTTCGGTCCATTGGTCGGAGAGGAGACAGAGTTTCGCGTGAGGCTTCTGCCAACACGGGGCATGGTGCTATCTCTCACTACAGCTGCTTTAGATCCAACAAGCATCAGGCTCTCCCCTCTCTCTAGGGAATGACAATCATAGTGGGCACCATGGGATCTTCCTAGAGAATTGGTTCTGTTTGCTAACAGCTCGAGTTTGGCACTGAAGAGCCTGCTACTCTCAAAATTTGGTCCTGTTTGTTTACCATTTAAACCCAGATCCTCTGGTGTGCTGCCCAAGAAAGACAAGTGAAGGTTTGGACCCTGGTTACTTGTTGAATTATGCTGGGGACTGGCTCTGTTTCTCTGGTCAAGACTTGACTTCCTCACAGGTGGTAAGGGTGGGATTCCTTTTGGACGAGTGAAGAAACCTTGCCTTCCAGATGATCCCCTCCGCTCCAGTGTGGCTCGAGGACTACAGGGAGTGGATGTAGTAACTCCGAGGGTTTTATATTCTCCACTTGTGTAGTGATAGGAAGAGTCATCAAGGTCATCCTGCTTGTTTAGCCGATGCCAAGCCCTAGGAAGGCTGCCAGTCCTGAGAATGTTAGCTGAAAACACAGGAGTTATGCTTTCTGAAGCATTTAGAACCATTTCACAACCATCTACAACCCTCTTGAAGGAATCAGGAGAACCTGCTGCTTCACAACTGCTTGAACTGTTTCTGTCGAACACACTTTTGCTCTTTATAGAATCAGATGTTCCTTTCTCTAGCTTTACATCACAGACAAGTTCTTCAGATTTGGAGGAATCCCTTTTCATCCAGGGATCATCAAAGATGATCTCACTTGAAAGAGGAACTGGTGGAGATCTGGGATCTTTGACTGCAGGGTGCTTGGTTGGTGGATCATGAATAATTGGCTTTACAGCAACACAAGGCTGAGCTGTTATATTAGTTTTGTTAGGGGAAAAACTATTCAAGGTGCATAATGACTGAACATTGGAAATGGTGACTGTTGTTTTTCCCACAGTTGGAGACATTTTGGTAGAAGTTTCAGTTACACAGAAAACATTTCCATCATCCTTGTTCTGTTCTGTGAGCTCCCCTTCCTCATTAATTTCCAGAAGCTGAACCTCAGCTAGTCCCTCACCCTGCCCAAAGCACTGCTGTGTAACAAAGCTATGGCAAGACTGTTCTCCACCACTTCCTGTGCTCATTtcagtcagccaagaactgTTAGAGGACCATCGGCTCATGATGACCTCCCCTTCAACCTTGCCATGAGGCTGGAATTTAGCAATATTGGCTTCTGAGATGGTGGCAGTGGTAGTGGAGGCTGCACTGCTATAGCACTCCAGGTCTTCACTCATACTGCTGATGATGCTGATGGGCCGTGAACCCGATGCGAGAGCCTGAACTGAGCAGTCACTGTTGAAGCTGATAATACTAGTGGGCCTGCCATCCTCAATGACCCcattcactgttagctcctcAACAAGCGTAAAGACCAACTCATCCTCGCCCTGTGGCTCTAAGAACTGCTGCAAGGTGACCGTTGTGCTGTTCTTATTGTCCAGAGGTAGTTGAGGAACATCATCACACAGTGTGTCCACTGATCCCAAACTATTGTAGGAAGAAGAGCGCTTCAGTACCTGAGGACCCATTCCAACAGGAGATGTTCTAAATTCAGCCTGAAGCAACGACTCAGTGGACGACTTTCCTGAATCTCTGTACAGGTTTTGTGAGGATTGGGGAGGTGTACTAGGCATTACTCCTTTCTGAGTGTACACTTTACAGCGCTGAGAAGGTGACGAAGGAGGTTTGTATTCTGATGTTTTTGTCAAACTAGCGATACCCAGCCGGGGGGAACCCATGGGACGAGTTTTGCCATCACTGCTGCTTCCTCCACTAATGGACTCCCTGCTGTTATGAAGACTGGAGCTGTTGGCCCTTTGAAGAGACGTGAGCTGTCCGACACCACTCCCTCCAGTTACACTCCGACTGCTAGAAAGAACACAATTGTTTATTGTAGACTTCGTCAGACTTTCTATAATGGACTGTGCAATTTCTGCTTCCTCCACCACTTCCCGGATCTCTTCTAGCTGCTGATCATTAGAGATCCTCTTGGGAGAACTTGTGGTGGTGCGAGATGGAAGAGGCTCAATTTTCTTAAGTCTGCTGGCTGGAACTTCTTCAAAAGGAAAATTGTTTACCTCCTCGCTGCCGTCAATGCACCCCAGTCGCTCTTGCAGCTCTGCAAAGGTGTTGCATTTGAGACAATCCTTTTCCTGCTTGCTAGACTCGGCAGTTTCTTCAGGTACAGGAGGAAGTGTCTGAGGATGAAGGGTCTGAATCGACTGGACTGTTTGTGGAGGCTGGATTAGTGAATCACCTAACTGAGACGGCTGTGCTAGCTTGCCTTGCTCATTCTTATTCTTATGTATAGATGGGATGATGGGTACAAACTCCGGAGGACCTTCGTTATCTGTGAGCTCTCTGTCCGAAAGCGCTGAACCGTTCGGACCTACATAGATTACGGTATCACAAGACTGCTCGCTGCTGGAATAGTCATCTGGGTCGCTGGAGATGTGAAGCAGTGGTATTTCGGAATCTCCAACGTTCCTGGAGTGTATGCTTCGGAGCTGAGTCGGACGTCTCATCCTTCCCTCCTCACAGGAGCTTTCTCCACCAGAGGAACTAGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205340 lncRNA downstream 1659 29233934 ~ 29234260 (-) True G173433
TU205336 lncRNA downstream 4000 29231613 ~ 29231919 (-) True G173431
TU205240 lncRNA downstream 127622 29107876 ~ 29108297 (-) True G173349
TU205241 lncRNA downstream 127622 29107876 ~ 29108297 (-) False G173349
TU205160 lncRNA downstream 155309 29078414 ~ 29080610 (-) True G173288
TU205342 lncRNA upstream 649 29239919 ~ 29241615 (-) True G173435
TU205345 lncRNA upstream 2830 29242100 ~ 29243390 (-) True G173437
TU205346 lncRNA upstream 2830 29242100 ~ 29243308 (-) False G173437
TU205347 lncRNA upstream 4730 29244000 ~ 29244985 (-) True G173438
TU205348 lncRNA upstream 6699 29245969 ~ 29246420 (-) False smyd3
XM_034308366.1 mRNA downstream 89314 29138020 ~ 29146605 (-) True LOC113525666
XM_034308295.1 mRNA downstream 105191 29118373 ~ 29130728 (-) True ndnfl
XM_034308210.1 mRNA downstream 143696 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA downstream 144530 29089234 ~ 29091389 (-) False calm1a
XM_034308219.1 mRNA downstream 160452 29072704 ~ 29075467 (-) True mrpl57
XM_034307914.1 mRNA upstream 6699 29245969 ~ 29329065 (-) True smyd3
TU205159 other downstream 185893 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other downstream 327367 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 327367 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 327367 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 327367 28900904 ~ 28908552 (-) True stmn4l
TU205344 other upstream 87656 29326926 ~ 29329076 (-) False smyd3

Expression Profile