RNA id: TU205352


Basic Information

Item Value
RNA id TU205352
length 1000
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G173441
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29344371 ~ 29349899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACATAATTCATATATACattaatgaaggaaaaaaaaaatcttttcttaaaaaacaaactgtgCTGTCTCGCAAAACACCAGCACCAGAAACACCACGTTATAGTTACTTTATACAAAAACACTTTATAGGACGAGTTGCACAAAAACGATTTCTATAAAATATCATCACTCCGCCGTGTTCAGGAGAAACCTGGCGGGACTCAGACACGCCGTCCGACAGCGTGGAGCTGAACtgctgcctcacacctccatTAGCTGTTACACCTCCATAAATCgggattatttttattgttaatgttatAAGATGATAAATTATGAAGTATAAGCTCGTGTGTAACGTTCTGATGTGGATGTTGGCTTTTGAAAGgtaatttgttgtttattataaatatattgttgTTTATTGAAGGCTTTCACAGTAACATTATTTTACACCTACAAAAGTCCAGTGCTgctttactgtttaaaaaatatgaaattaacCAGAATTATAACATTCACTTTGAtcttggattattattattattattattattattattattattccacgATTATAAGTGTTGATAAATAACTATGCTGATGATGAAACAACATCATACTATAAAGTCATCATATTGTTCCaactgtctgtgcatgtgtctcGTCGTAAagcaagctgtgtgtgtgtgtgtgtatgtgtgtgactgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatatgtgagtgtgtgtgtgaacatgtgtgtgcgtgtgtgtgcgtgtgtgtgaacgtgtgtgtgcatgtgtgtgtgtgtgtgtgaacgtgtaGTTTTTATCCGCAGCCCGTGTTTTTGGTGTTCTCCAGGATCTCGTCGTAAAGCCAGCTCTGTGTGAACTCCTCTGATTTCTCCATCAGCTCGAACAGGCGTTTGTACTCGCTCGGGGAAATCTGTCCCGTCATCACGTCCTCAAACAGTCCCATCTGCAGCAGGACGTCTGTGCCGCTGCCCGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205361 lncRNA downstream 3611 29340100 ~ 29340760 (-) True G173449
TU205359 lncRNA downstream 4760 29339179 ~ 29339611 (-) True G173447
TU205354 lncRNA downstream 10327 29332402 ~ 29334044 (-) True G173443
TU205353 lncRNA downstream 36893 29277201 ~ 29307478 (-) True G173442
TU205348 lncRNA downstream 97951 29245969 ~ 29246420 (-) False smyd3
TU205369 lncRNA upstream 9638 29355098 ~ 29356090 (-) False G173457
TU205370 lncRNA upstream 9638 29355098 ~ 29359259 (-) True G173457
TU205371 lncRNA upstream 11012 29356472 ~ 29358281 (-) True G173458
XM_034307914.1 mRNA downstream 15306 29245969 ~ 29329065 (-) True smyd3
XM_034308366.1 mRNA downstream 197766 29138020 ~ 29146605 (-) True LOC113525666
XM_034308295.1 mRNA downstream 213643 29118373 ~ 29130728 (-) True ndnfl
XM_034308210.1 mRNA downstream 252148 29089172 ~ 29092223 (-) True calm1a
TU205344 other downstream 15295 29326926 ~ 29329076 (-) False smyd3
TU205341 other downstream 105101 29235919 ~ 29239270 (-) True G173434
XR_004578918.1 other downstream 435819 28900904 ~ 28908552 (-) False stmn4l

Expression Profile