RNA id: TU205353


Basic Information

Item Value
RNA id TU205353
length 417
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G173442
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29277201 ~ 29307478 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctGTAACATTTTCCCGTCACGTGTTCTTACTGATTTTACACCTTCAGATTTTACACTGACCTgtttcataaaacatttaaagacgACATCAAATATCTTGTAATATTagaataaacaacaacacaatgtcgagtaataaacatcacagcgtcgagtaatgaacaacacaacgtcgagtaataaacatcagtgtcgagtaataaacaacacaatgtcgagtaataaacatcacagtgtcgagtaataaacatcacaacgtcgagtaataaacaacacaacgtcgagtaataaacatcacagcgtcgagtaataaacatcactgcgtcgagtaataaacatcacagcgtcgagtaataaacatcacagcgtcgagtaataaacaacacaatgtcgagtaataaacatcacagcgtcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205348 lncRNA downstream 30781 29245969 ~ 29246420 (-) False smyd3
TU205347 lncRNA downstream 32216 29244000 ~ 29244985 (-) True G173438
TU205345 lncRNA downstream 33811 29242100 ~ 29243390 (-) True G173437
TU205346 lncRNA downstream 33893 29242100 ~ 29243308 (-) False G173437
TU205342 lncRNA downstream 35586 29239919 ~ 29241615 (-) True G173435
TU205354 lncRNA upstream 24924 29332402 ~ 29334044 (-) True G173443
TU205359 lncRNA upstream 31701 29339179 ~ 29339611 (-) True G173447
TU205361 lncRNA upstream 32622 29340100 ~ 29340760 (-) True G173449
TU205350 lncRNA upstream 36893 29344371 ~ 29345460 (-) True G173441
TU205351 lncRNA upstream 36893 29344371 ~ 29349899 (-) False G173441
XM_034308366.1 mRNA downstream 130596 29138020 ~ 29146605 (-) True LOC113525666
XM_034308295.1 mRNA downstream 146473 29118373 ~ 29130728 (-) True ndnfl
XM_034308210.1 mRNA downstream 184978 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA downstream 185812 29089234 ~ 29091389 (-) False calm1a
XM_034308220.1 mRNA downstream 202408 29072704 ~ 29074793 (-) False mrpl57
TU205341 other downstream 37931 29235919 ~ 29239270 (-) True G173434
XR_004578919.1 other downstream 368649 28900904 ~ 28908552 (-) False stmn4l
TU205344 other upstream 19448 29326926 ~ 29329076 (-) False smyd3

Expression Profile