RNA id: TU205371


Basic Information

Item Value
RNA id TU205371
length 438
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G173458
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29356472 ~ 29358281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctatacatcactatacatcactatacaccgctatacatcactatacactgctatacaccgctatacatcactatacaccgctatacatcactatacatcactatacaccgctatacatcactatacatcactatacaccactatacaccgctatacatcactatacatcactatacatcactatacaccgctatacgCCACTATACACTgctatacaccgctatacatcactatacatcactatacaccactatacatcactatacaccgctatacatcactatacatcactatacatcactatacatcactatacaccgctatacaccgctatacatcactatacaccgctatacaccgctatacatcactatacaccgctatacatcactatacaccgctatacaccgctatacatcactatacatcactatacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205369 lncRNA downstream 382 29355098 ~ 29356090 (-) False G173457
TU205351 lncRNA downstream 6573 29344371 ~ 29349899 (-) False G173441
TU205350 lncRNA downstream 11012 29344371 ~ 29345460 (-) True G173441
TU205352 lncRNA downstream 11012 29344371 ~ 29345460 (-) False G173441
TU205361 lncRNA downstream 15712 29340100 ~ 29340760 (-) True G173449
XM_034307914.1 mRNA downstream 27407 29245969 ~ 29329065 (-) True smyd3
XM_034308366.1 mRNA downstream 209867 29138020 ~ 29146605 (-) True LOC113525666
XM_034308295.1 mRNA downstream 225744 29118373 ~ 29130728 (-) True ndnfl
XM_034308210.1 mRNA downstream 264249 29089172 ~ 29092223 (-) True calm1a
TU205344 other downstream 27396 29326926 ~ 29329076 (-) False smyd3
TU205341 other downstream 117202 29235919 ~ 29239270 (-) True G173434
XR_004578918.1 other downstream 447920 28900904 ~ 28908552 (-) False stmn4l

Expression Profile