RNA id: XM_026911907.2


Basic Information

Item Value
RNA id XM_026911907.2
length 6066
RNA type mRNA
GC content 0.46
exon number 8
gene id emilin1b
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28968131 ~ 28983869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGAAGTGCCCCCGTCACTCCGGTTTGGAGCTGGACTGAAACGGATCGGGGTGTAAAGTTGAACCCGCTCACACACAGGGATGATGAAGTGAGCTTGGGCTGTGTTCCAATCGCAGACGCAGGTTAAACCTGTCAGAGGGAGTTTTAAAGCTCATCTGTGGAGGCTGGAGCTCATGGAGCGGCTCAGTGCGCGTTTCTGCCCGCGCGCTTTTCTGCGGGACTGATCTCAGGACGCGGGACTTCAGGCCGGGTTTCAGCCTCTTCAGCGGTGTGTGGAGGGGATTTACAGCATGGCTGGGGTTGGGCTGCTTcttctgatggtgtgtgtgtgtgtgagtgtgtgtggagcctCGTGGGGCGGACAGCAGCGCTACAGCCTGTACGCAGGGAGCAGGGAGCATGGACCGGCTGGGGACGGAGCCCGAGCCGCCAGCAGGCACAGgaactGGTGTGCGTATGTGGTGACGAAGACAGTGAGCTGCGTGGTGGAGGACGGAGTGGAGACGTACGTGAAGCCTGATTATCAGCCGTGTTCCTGGGGAGTGCAGTGTCCTCGCATCTTAATGTATCGGACGTATTTGAGGCCGAGATATAAGATAGCGTATAAAATGGTCACTGAGATGGAGTGGAAGTGTTGCCATGGATACAGCGGCGAGGACTGTAACACAGAGAACGGCGGCGGGAACGGAGGATCTGTCACTCAGATTTCCACAGCGAGACCGTGGCCTAAGCCCTTCAACCCGGGACACACAGGACACGGACAGAATGGAGGGAACGGGAGAGGCGACAGCGACAAGATGAAACAGATGGAGGACAAAATCCAGCGTTTGACTAAAGACCTTCATGACTTGCAGTCGACGTTACGCACCATGAACGAGAAGTTTCAGGAGGAGATGAAAAAACCCGGATCGAGCGGTGGAAAAACGCCGGCGGACGCGGCTCAGCCTGAAATGAAGGAAACGATTCACAACATCCAGACCAAACTGGATCAGCTGGACAATCGGACTCAGGCTCATGATAGAACTCTCGATAGCATCAATAATCACCTGGTTAACGGAAGAGGCGGGAATGATCTGGACGGCCATGATGGAGGCAGATTCAACGTCTTGAAGGAGGAAATCCTGCGCGAGTTGGAACGCCGGGTTTCTCTGTCCTGCACTGCTTGCCAAGCCGGCGTTGACGACCTCCGGAGAGAGCagcagagggacagagagaggatcTCAGCTTTGGAAAAGAAGATCAACGACCTGGAACAGAAGAACCGCCAGGTTCTGGATGGACTGCGTCGGGATCTGAGCCGATCTCAAACCTGTTGTGATAAAATCAGGGATCTCGAGACGAATCTCAGGGATATGGATAAGAAGATCACTTCGACTTCCGAGATGTGCACCAGTCTCGAGGATCGTCTGGAGAAAGAGCTTCAAGGAACAGGAGGTGGTGGAGGTTTCGGAGGAGCAGGAGAAAGTGGAGGAGGACAGAGAAGACCGGAGGATACGCTGAACAGTTACCTGGAAGACTTAGAAAGACGGATTAACAGCACAGTGCAGAGGACAGAAGAAAACTGCGCTTACATGGAGAATGATTTGAAGGATTTGTTCCAAAAAGGCCTCATAGACCTACGCAAGGAGATCAACGCTCACCTCGATGTTCAAGACAACAGAATCACAGATATAGTCCTGGACATCGGGATCGTGAAAGAAACCCTGTTTGATCTGGACAAGCGCTTGTCTCGGCTGCAGAATGCCACGTCTCATATGGATCGGAGAATAAACGAATGCTCTTCGTGCCCTGGTTCTAAAAGACCCACGGGAGGAAGTGGAATTAGACCCACCGAAGATACGGATACAGTCAAGTCCCTGGAATGGAGAGTTTTTGCTAACGAGGATGAGATCAAGAGATTTGACACGAGGATCAAAGATCTCTCTGTTTCCGGCGACTCTCTGCTGGATAAAGTGATCGATCTTAGCCATGACGTACGAAAGATCAAAGAGGTGACCGGCGACAACGGTGAACATTTCATTCGTATCATTACCGAAATTGAGAACTGCCAATCAGACCTTTGTAGGACGGTGCAAGATGACCTGAGGAGGCTCAAGAACATCACGAACCATGCCATGGATAAGTGGCAAACGGATATGAATTACATAAAGGGCAAGGTGGATTCGGGATGCTCGGGCGGATGCAGCACCCTGCAAGAGGAAGTGAATAAACTTAAAGAGGATGTGCATAAATGCAAGATCTGTTTGGAGACTACGACAGGACCAGTAACAGAACCAGGAGACCTGGACGGTCCTCAGAAACCCCTCGATGGCCACAGTGTGATCAGCAGCAACAACGCTAACCTCGGATCAATCCAGGGCGAGTTATCAGGAGTCATTTTAACCTTCAGCTCCATCAACGACACTCTGAAAGGTTTGGAGCACAGTGTCCGGAAACACGACAGCGTTATCACCGATCTGGGAAACACAAAGGACAAGATCATCTCCGAGCTTGATAAGATCCAGCAGGAAGTGACGGAGCACATCGAGGACAGTAAGATGCGCTTCGACAACATCGATCGCGACATCAAGCGTTTCGGAAGCAACTTTATAGAGAGAACAGGCAACGGCCTCGACAAGAGGATCACCAAACTCGAAGGGGTTTGTGGTCGACTCGATTCTGTATCTGAGAGCTTACAGAAAATCAAAGAAGGACTGAACAAGCACGTGACGGGGCTGTGGAGCTGCGTAAACGGGCTGAACACGACCGTGATCCACCACAGCAGCTTCATCGACACCATGGAGAGTACACATCTGGATGGCATCCATGGCAAGATCAAACAGCTCAACTCCTCAGTGCAGCATCTTCTCAAGGAGTTCAGGAGCCTGATGGAGCACGACTTCACAGGTCTGCCTGGACCCCCGGGTCCTCAGGGAGAGACAGGTGACAGAGGAATTCCAGGACTTCCAGGACTTGCTGGACCACAAGGACCACCAGGACCAACTGGTAAACCAGGTGTGGAAGGACCAAGAGGACCACCAGgtCTCAGAGGAGAACGAGGTCTCCCAGGCGTCGATGCTAACGTTCCTCAGGTGTCGTTCTCGGCCGCGCTCACGAACCCGATGACTTCATCCGGAACCATAGTGTTTGATAAAATCTTTGTGAATAAAGGAGACTTTTACGATCCACGAACAGGAATCTTCACGGCTCCTCGGGATGGTCATTACTTCTTCAGCGCCATTCTGACGGGTCACAAGAACGAGAAGATCGAAGCGGTTCTGTCCAAGTCGAACTACGGGATGGCGCGCGTGGACTCGGCCGGGTATCAGCCCGAGGGCCTGGAGAACAAGCCGGTGGCGGAGACGAAGCCGACGCCCGGATCTCTGGCCGTGTTCAACATCATCCTGCCGCTGCAGATGCACGACACGGTGTGTGTGGACCTGGTGATGGGGAAACTGGCGCACTCGGTCGAACCTCTCACCATGTTCAGCGGCGTTCTGCTCTACGAGGATTACTCATAACCCTGAGATTTCTCAACGACGGGGCCGAACCTCGACCTCCCGAGTCGCACCGTGGACACGCTCACACACGTTTCTGTGATTCTGTTCTTGTGTGAACTCCTGAATTCAGAAGAGGATTTAATTCAATCCATTATATTTACTCTTTCCTTTTGACCTTTTGGAGACGCGTTTTTTACAGaaactactgtttttttaattaatattattattattattatttttattattattattgatatgaaaattatttcagattttatatAAATCACACAGTGTTATGAATCGTTTTTCACTTTCAGTATAAAAGTAGGCTAAGACTCTCGCTGCAGTTCGTGTGCCGATATCGCTAATCACAATATCCCATCACAATCGTTTATTAATTAGCATTAGGTTTATCATAATATTgtatctttattgtcattgatCAGCTTCTTGAGCGCGGATAAACTTCTGAGCAGTGCCTCATCTGGGATTCACTAGAAGAAAAACTTCtcttgctagctagcatgtagccGTGAAGtcatttatacacactttatacacactttatacacactttatacacactttataagGACACAGTGAGAGTGGAAACGAGCCAGAATTTTCCGgaacgtcaacatttacctcagatgtgttggaaaATTACTAAAAGAAAGACTCCATATGACTAAAATTATGCTGTAATTATGGTTAGCATTGACCGCTAACTCAACTTCTATGTTTTCCACTATAGTGAGAAAATCAGCTCTCAGAAAGTTTAAATTTTCATACAAAAGGTGCtatgttaataaaacaaataaaaaaaaccgcACAAAATATGGAACAGATTATGCAGCAGAAAATACAAGCACAGGATTAGCTTTTGTAGCAAAGAACTAGCatagctaacactagctagcaaGTCCcacatgttagctagctacatgcAACCATGAAAAGTGCTTCTGTGGATCTACAAACACAAATCTGACTGTTAATCAGAACAGGAAAGAAAATATTCACTGAGAGTCAGCAGTTAGCGCaaatgttagcatgctaatatGTTCCTCAGTCAGAGAGACAGTTCTGTCAGCCATGTTTTTAACCTCTAACCtctgtggtgaacagaattatggggaaaaaacaaaatgtctgaaatgagGACATTAAGAAGACTGTTGTGTTTACGCTATGATAGTAATGATGTACAGGTTAAATATATCCTACAACTGATAAGCGGCACATGCCTAGCGCTCAcctgataaagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgagtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtttggaaagaagagcaaaaaaataaaaatgctttacGTTGGCTGGTAACTATGGAAACCATCGCCATCAATGAACattatagaaaaaagaaaactcacaATATAATACACACAAGATCTGTCTAAGAATTAAAAATgaggttttaataaaaacaacgAAATACGATTTCaggataaataaaaaaggctAATATTTACAGgcaatgataaataaacaaataaataaataaataaataaatgacaatttTCAGGCTTGTAATTTAACTCCATTTCACTTCATCTGACAGAATAGTTAGTGTTCCTCAATGTGAATCAACATTAAAGCGCCTATAagcaacattagcattagcattctTTTAAGACATTATCTCTCAATGAAGTTTTATAAAAATGGCTACAGCAAAACAACTATGACTACGACTTTAAAGAGCCAATAAAGGATATTAGCGTTAGAGACAATAAGGAATATGATACAAATGAAGCCGAATGATGACAACTTTAAAGGGCCGATAAAGTGTTTTAGCATTAATGTTAGCATTAAGACTGTTACCACTAGCATTAGCACTGAGTTGAGAGCGTTCCCTTAAATCCAGGATGGtcaatgcagaaaaaataaatatttcacatgaTGTCAGAGCAACCAGACCAAAACATTGACATTCTCCCTTCATGCATTTCAGCTTTAAAGTGCCTATAAAGAGAATTAGCTTTAGCACTAGCATCTTTGTATGACCTGGTTTGGTAATGAGACAGTGAAAAAGTGCTTACAGCTGAAAGCCAAAGAAATTACGAGTGCGAGTTTAAAGCGACTGTAAAGAGAATTAGCATCAATagaacattgtttttgtttgtttttttatgaaaaattcCAAAGCAATGTCTGACTTCATCACTAACTGTTTGTAACGAGAGGAGATGTTTCTGCTAACCCTCGCCTCGAGTGACGCGTCACGCTGCTCTCGCTCTTCTGCATTACCAgctggtattattattattattattattattattattattttgactcTTTCCCTCAGAAAACACGTTCACTTTGTAAACGGTGGAAACGGAAGCTGAATAACTGAAGCCCGCGTGACGTGTGGCGGCTCCTCGCGGTTTAACCTGTGACTCTGAATGTGTTTGTTGGCAGCACATGTgttaaataaagatatttaattttACACA

Function

GO: NA

KEGG:

id description
K24246 EMILIN; emilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204956 lncRNA upstream 32431 28861483 ~ 28935700 (+) False brms1la
TU205013 lncRNA upstream 45045 28921469 ~ 28923086 (+) True G173201
TU205010 lncRNA upstream 46732 28921003 ~ 28921399 (+) True G173200
TU204961 lncRNA upstream 104033 28832346 ~ 28864098 (+) True G173156
TU204959 lncRNA upstream 142766 28820500 ~ 28825365 (+) True G173154
TU205026 lncRNA downstream 5250 28989119 ~ 28989706 (+) True G173208
TU205027 lncRNA downstream 5485 28989354 ~ 28989706 (+) False G173208
TU205028 lncRNA downstream 6928 28990797 ~ 28993470 (+) True G173209
XR_004578930.1 lncRNA downstream 69267 29053136 ~ 29054210 (+) True LOC117598233
TU205051 lncRNA downstream 80313 29064182 ~ 29173464 (+) False LOC117598323
XM_026926871.2 mRNA upstream 69528 28895892 ~ 28898603 (+) True il17a/f1
XM_034308076.1 mRNA upstream 101481 28861462 ~ 28866650 (+) True brms1la
XM_026926000.2 mRNA upstream 101481 28861462 ~ 28866650 (+) False brms1la
XM_026925999.2 mRNA upstream 101481 28861462 ~ 28866650 (+) False brms1la
XM_026926004.2 mRNA upstream 171356 28792839 ~ 28796775 (+) True LOC113533718
XM_034308360.1 mRNA downstream 13155 28997024 ~ 29006766 (+) True ankef1b
XM_026911914.2 mRNA downstream 24651 29008520 ~ 29026238 (+) True snap25b
XM_034307949.1 mRNA downstream 44801 29028670 ~ 29051439 (+) True ahctf1
XM_034308248.1 mRNA downstream 70364 29054233 ~ 29067337 (+) True kif28
XM_034308216.1 mRNA downstream 91733 29075602 ~ 29087181 (+) True ttc7b
trnak-uuu_7 other upstream 1242852 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1502482 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1502482 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1502482 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 2052701 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 85851 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 109622 29093491 ~ 29138776 (+) False nrde2

Expression Profile