RNA id: XM_026911914.2


Basic Information

Item Value
RNA id XM_026911914.2
length 2487
RNA type mRNA
GC content 0.43
exon number 8
gene id snap25b
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29008520 ~ 29026238 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTCACGCACAGGGTGACCACGCCCTTCGTGACGTCAGGGCGCGTCGCCATCTTCGCTGAGGGCGGGGCTTTACTCCCAGCTCAGTGTAGAGGATGGATTTGTTGTGAAAGAAGCTGAACTCAGGCTGAgaagataaaacacacacacacacacctcttacacactcttacactctctcacacacacgcacacacacacaggacgaGTTTAATCCTGAGTGCTGAAGTTCTGAGCCAAAATGGCGGACGACGCTGACATGAGGAACGAGCTGACCAACCTGCAGGAGCGAGCGGACCAGCTGGCCGACGAAtcgTTGGAGAGTACTCGGCGCATGCTGCAGCTGGTGGAGGAGAGTAAAGATGCCGGTATCAGGACTCTGGTTATGCTGGATGAACAGGGAGAACAACTGGAGCGCATTGAGGAGGGAATGGATCAGATCAACAAGGACATGAAGGAAGCGGAGAAGAACCTGACGGACCTGGGGAACCTCTGTGGgctctgtccctgtccctgtaaCAAACTGAAAGAGCGAGGACAGAATTGGGGAAACAATCAGGACGGCGTTGTTTCCAGCCAGCCGGCTCGTGTAGTGGATGAACGTGAACAGATGGCCATCAGCGGGGGATTTATTCGCAGgGTAACGAATGATGCGCGGGAGAATGAGATGGATGAGAATCTGGAGCAGGTTGGCAGCATCATCGGGAATCTGCGTCACATGGCTCTGGACATGGGCAACGAGATCGACACTCAGAACCGCCAGATCGACAGGATCATGGAGATgGCTGATTCCAACAAAACGAGGATTGACGAGGCCAATCAGCGCGCCACAAAAATGCTGGGCAGCGGCTAAACGCCTGAGAAATTACTTTCAACCTTCTGTCCCACTTCCTGCCTGTTTCCTCTTCTATATAATCAGCtttacacacatatgtatacacacacatgtgcacacacacacacacacacacacatacacacacacacacatacacgtgtatacacacacacacacacacacacacatacacgtgtatacacacctacacacatgtacacacacatatcatagAAACTGCTGTTCTGTGTTGTATAGTAGTGATGAGTGATTCATGATTCACTCCTGTTAAATGACTCTTTTAAGTGAATCATGTGAATCAATTCACAATCACAAACAAATCTCACACTGATTCTGCTTTCAGAAAAATtcagcagtgattttttttttttatctcctgtCACTTAAAGTTTCTATCAGTTATCTGCAGGAAATATTCAGAACAAACCTTCTGACCACAAATTAGACGTCTTCAGAATCAGGTGTCTCCTTTAGTCCATATATGGACAAAACTCTGAATATTCATCAGCAAATTAAAATTCTTTTGacatggccacgccccctttgCTTTCTCCGTGTGAACAAGCACAGTCTTATAGTCAGTGTATAGTTTATAGTAAGTTATAGATATTAATCTTCGACACTtgctgtgtgtttcagctcGGCCGCTCTGAGTGGTGAATCAAACGAATCAAATTGAATCTGACTCACTTAAATGAGTAGTTAGAAAGAGTTGAATCAGTGACTCATGATGTTCATCACTTGCTgtaaatacacactcactccatTCCATACATGtaactgtatgtatataaacagTGCATATCTGATTACTGTATCTCACATGTGAAGgtttcattttgttgttgttgttgttgtttttgtatttaaaagtattttaattaaaGACTTCCTTAATAAGCTGTAACAACAGATCACTACACCTCTTAGCATATTCCATctttcacactttctctctatgtatacacactgtatatgtatttatttactatattctATCATATTACATTATCTACACACTCTTAGTGAATAGCTAAcagtagtgttgtgtagtttgTGTCTCCAGCTTTTTATGTAAACATTGAATTTGCACATGAGATAAAACAGACgaggaagaaaggaaacagagtgtttggaataaatgatgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtgtgtgttccagtctcTCCATGACTGGCACAcgttgatgatgtcatcatgtCGCTCCATGTTCAGCGTGATCGATAAAGCAGCAGGTGAAAACACACCTCTGTTTAACCGAGCTCACAGCTGAGACAGATTTTCAGCTGgaaaagtatgatgtgtgaGATTTAATCCACTCTCCATCCAAAAGCGATGATGTGCTTCAACACAGCAGTTTATCTGATTTAAAACCTTCATTCCTGCAAACTTTACTACAGTGTCACACTTTGTGTTCAGCTCAATCGATGGAGAATACGATGaagaaaagagaataaaaatacagcagtaCACCAGTGGAGCTGCTTGTGTGATTTACGTGTACAtctcatttatttacatgaaatctggaaagaggaaaataaaCTGGGAAATAAAGAGTCTGCTTTTC

Function

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0031201 SNARE complex cellular_component

KEGG:

id description
K18211 SNAP25; synaptosomal-associated protein 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205028 lncRNA upstream 15050 28990797 ~ 28993470 (+) True G173209
TU205026 lncRNA upstream 18814 28989119 ~ 28989706 (+) True G173208
TU205027 lncRNA upstream 18814 28989354 ~ 28989706 (+) False G173208
TU205013 lncRNA upstream 85434 28921469 ~ 28923086 (+) True G173201
TU205010 lncRNA upstream 87121 28921003 ~ 28921399 (+) True G173200
XR_004578930.1 lncRNA downstream 26898 29053136 ~ 29054210 (+) True LOC117598233
TU205051 lncRNA downstream 37944 29064182 ~ 29173464 (+) False LOC117598323
TU205043 lncRNA downstream 40604 29066842 ~ 29138878 (+) False kif28
TU205052 lncRNA downstream 45294 29071532 ~ 29073089 (+) False G173221
TU205036 lncRNA downstream 52999 29079237 ~ 29080134 (+) True G173215
XM_034308360.1 mRNA upstream 1754 28997024 ~ 29006766 (+) True ankef1b
XM_026911907.2 mRNA upstream 24651 28968131 ~ 28983869 (+) True emilin1b
XM_026926871.2 mRNA upstream 109917 28895892 ~ 28898603 (+) True il17a/f1
XM_034308076.1 mRNA upstream 141870 28861462 ~ 28866650 (+) True brms1la
XM_034307949.1 mRNA downstream 2432 29028670 ~ 29051439 (+) True ahctf1
XM_034308248.1 mRNA downstream 27995 29054233 ~ 29067337 (+) True kif28
XM_034308216.1 mRNA downstream 49364 29075602 ~ 29087181 (+) True ttc7b
XM_034308217.1 mRNA downstream 50489 29076727 ~ 29086819 (+) False ttc7b
XM_034308218.1 mRNA downstream 51196 29077434 ~ 29086819 (+) False ttc7b
trnak-uuu_7 other upstream 1283241 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1542871 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1542871 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1542871 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 2093090 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 43482 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 67253 29093491 ~ 29138776 (+) False nrde2

Expression Profile