RNA id: XM_026912079.2


Basic Information

Item Value
RNA id XM_026912079.2
length 7679
RNA type mRNA
GC content 0.50
exon number 15
gene id kif26ba
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29175671 ~ 29243356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgttgcatgcaGTAGAGGCGCGCGCGCAGACCTGTATGGCGTTCACTGTCGTGGCGCCGTTCCTGCACGCGCGCTGAAAACCGGAGCTCGGGATTCTGTTTGCATTCTGGGAATTTTGGAGAAACGGGAcagaggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtggaCATGCGTAAAGGTGATGGAGAGTTTTCCCGCATGGCGCTGAGACGGAGGCGCGCGCAGGAATAATCTCCTTCACGCGCGTGGATGTGATTTAATAATTTAGAGAGAATATCTGGGAGAATCTCAGCATGACCTCTGTGAGCGGGAATAAAGAGAGGAGCGGCAGGAACCGGAAACACACGATGACGGATGGTTCTCCTACCAAATCGGCCTCGTTCTCGCCGGACTCGTGGTACCGTAAAGCATGTGAGGAGTCTCGCTCTGGGTTCCGCCCAGTTCCTGAGGGAGCTCGCTCTGTTCCCGGTTCCTCAGGCGCCCCCTCCCCCGGCTCTGGAACCTCCTCCCCGGGTTCTTTCTCCAGCTCTCCGGGCACTGTATCTCCAGGGATTGGGACGagttctccaggttctctgggaGGTTCTCCAGGGTTCGGTACAGGCTCTCCGGCCTCGGGCAGTGGTAGTTCTCCGGGTTCTGAGAGAGGAACATGGTGTGATACCTGCACCGGCCGCCTGGTGGAGCTGAAGAAGCAAGCGGCCAAACTGCTCCTCCCCGGACCTTACTCCTCCAAGgACCCAtcgctctctctcctcctccatgATAAGCTGCAGATTCCCAGCAGCCCGAGGAAAGCATGGAACGAGCATGAGAGCCGCTGTGATGTTTGCTTCACACACCTGAGCCAGTTAAAACAGGAAGCTGTGCGATTGGTGCTCACCTGTGACGTGTCACCTGGGTCTCCGCCCTCTCTCGCCTCATTGGTGGGTACGAGGAGCCTCATCCAAGGCTCCACCCCTACCCACCTGCCCGGATCCTACCATTCCGTcacttctttctcctcctctaaCAGTGCGGTTTTGGCCTCCAGCGTCTCATCAACCTGCAGTGCAACCACCCCCGCTAGCGTTAGCaatgttagcattagcagcCCTCATCATACCAAATATGGCACCAAACCCAACACACTCGGTGTGGAGAAGAAGACTGGCTCtccggcacacacacaccccgagaACACCTGGTCACCTGCACACTTGTCTCGCTCCAATGGAGTCACACTCTTCCCTTATCAGatgtcaGACAGTAATAAAGAGTGCATGAGTGAAACCATACTGAACCGCTGTAACACTGATCGCCTGGTCCCGCCCCCGGCTCCGCCCACTACAGCGCCCTCCACAGGACCGTCAGCTGCTGCTTCCTTCTTCGCCAGAGCGGCTCAGAAACTAAACCTGTCCTctaaaaagaagaaacagaagacGACGCCCACTGTTCCACTGGCCCCACCCCTTTTCCCGACAAACTTTGGTGGAATCCTGCAGGTCACTCCGCCCCCAGCCCCGCCCTGTCTGCTCAGAGCTGTCAGTAAAGTGAGAGATAATCCAGGCCTTGGTAAGGTGAAGGTgatgctgcgtgtgtgtgccgTGTCCCACGCTGAGTCCAGCTCCTTCCTGAAAGTGGACTCTCGTAAGAAACAGGTGAGCATTATGGACCCGGCCGCTAACTCCACTTCTCAGCAGAACTCCAATCAGAAACGAGGAGCCTCCACCCAAGCCCCGCCCAAAATGTTCACGTTTGACTCTGCCTTCTCACATGATGCCTCACAGgcagAGGTGTGTGCAGGTACAGTAGCGGAGGTGATCCAGTCGGTGGTGAACGGAGCTGACGGGTGTGTCTTCTGTTTCGGTCACGCCAAACTGGgaaaaaCCTACACCATGATTGGGAAGGACGACTCCATGCAGAACCTGGGCATTATCCCCTGCGCTATCTCCTGGCTCTTTAAGATCATTACGGAGCGGAAGGAGAAGACGGGCGCTCGGTTCTCTGTGCGTGTCTCCGCCGTGGAGGTCTGGGGGAAAGATGAGAACCTGAAGGACCTGCTGTCCGACGTGGCCACGGGCAGTTTACAGGACGGCCAGTCGCCTGGAGTTTACCTGTGTGAGGACCCCATCTGTGGCATGCAGCTGCAGAATCAGAGCGAGCTGCGAGCGCCGACGGCAGAGAAAGCTGCCTTCTTTTTGGACGCCGCCATCGCAGCGCGGTACAGCAGCCGAGCCGAGTGTGACGAGGACGAACATCGCAACTCACACATGCTCTTCACGCTGCACATCTACCAGTACCGCATGGAGAAGACCGGGAAAGGAGGAAtgtccgGAGGCCGCAGTCGTCTGCACCTGATAGATTTGGGAAGCTGTGTGAAGGAGTTGGCTAAACCCCGTGAGAGTGCCACGCCCAGtcagtgtctgtctctctcggcCCTCGGGAACGTCATTCTTGCCCTCGTCAACGGCTCCAAGCACATTCCCTACAAGGACAGTAAGTTAACGATGCTGTTGCGAGAGTCACTGGGAAACATGAACTGTCGCACCACCATGATCGCGCACATCTCCTCCTCTCCCAGCCATTTCTCAGATACTCTCTCTACGCTACAGATCGCTTCTCGAGTgctgaggatgaagaagaagaagactaaACAGTACACGTCTAGTTCCTCTGGTGGAGAAAGCTCCTGTGAGGAGGGAAGGATGAGACGTCCGACTCAGCTCCGAAGCATACACTCCAGGAACGTTGGAGATTCCGAAATACCACTGCTTCACATCTCCAGCGACCCAGATGACTATTCCAGCAGCGAGCAGTCTTGTGATACCGTAATCTATGTAGGTCCGAACGGTTCAGCGCTTTCGGACAGAGAGCTCACAGATAACGAAGGTCCTCCGGAGTTTGTACCCATCATCCCATCTATACATAAGAATAAGAATGAGCAAGGCAAGCTAGCACAGCCGTCTCAGTTAGGTGATTCACTAATCCAGCCTCCACAAACAGTCCAGTCGATTCAGACCCTTCATCCTCAGACACTTCCTCCTGTACCTGAAGAAACTGCCGAGTCTAGCAAGCAGGAAAAGGATTGTCTCAAATGCAACACCTTTGCAGAGCTGCAAGAGCGACTGGGGTGCATTGACGGCAGCGAGGAGGTAAACAATTTTCCTTTTGAAGAAGTTCCAGCCAGCAGACTTAAGAAAATTGAGCCTCTTCCATCTCGCACCACCACAAGTTCTCCCAAGAGGATCTCTAATGATCAGCAGCTAGAAGAGATCCGGGAAGTGGTGGAGGAAGCAGAAATTGCACAGTCCATTATAGAAAGTCTGACGAAGTCTACAATAAACAATTGTGTTCTTTCTAGCAGTCGGAGTGTAACTGGAGGGAGTGGTGTCGGACAGCTCACGTCTCTTCAAAGGGCCAACAGCTCCAGTCTTCATAACAGCAGGGAGTCCATTAGTGGAGGAAGCAGCAGTGATGGCAAAACTCGTCCCATGGGTTCCCCCCGGCTGGGTATCGCTAGTTTGACAAAAACATCAGAATACAAACCTCCTTCGTCACCTTCTCAGCGCTGTAAAGTGTACACTCAGAAAGGAGTAATGCCTAGTACACCTCCCCAATCCTCACAAAACCTGTACAGAGATTCAGGAAAGTCGTCCACTGAGTCGTTGCTTCAGGCTGAATTTAGAACATCTCCTGTTGGAATGGGTCCTCAGGTACTGAAGCGCTCTTCTTCCTACAATAGTTTGGGATCAGTGGACACACTGTGTGATGATGTTCCTCAACTACCTCTGGACAATAAGAACAGCACAACGGTCACCTTGCAGCAGTTCTTAGAGCCACAGGGCGAGGATGAGTTGGTCTTTACGCTTGTTgaggagctaacagtgaatgGGGTCATTGAGGATGGCAGGCCCACTAGTATTATCAGCTTCAACAGTGACTGCTCAGTTCAGGCTCTCGCATCGGGTTCACGGCCCATCAGCATCATCAGCAGTATGAGTGAAGACCTGGAGTGCTATAGCAGTGCAGCCTCCACTACCACTGCCACCATCTCAGAAGCCAATATTGCTAAATTCCAGCCTCATGGCAAGGTTGAAGGGGAGGTCATCATGAGCCGATGGTCCTCTAAcagttcttggctgactgaAATGAGCACAGGAAGTGGTGGAGAACAGTCTTGCCATAGCTTTGTTACACAGCAGTGCTTTGGGCAGGGTGAGGGACTAGCTGAGGTTCAGCTTCTGGAAATTAATGAGGAAGGGGAGCTCACAGAACAGAACAAGGATGATGGAAATGTTTTCTGTGTAACTGAAACTTCTACCAAAATGTCTCCAACTGTGGGAAAAACAACAGTCACCATTTCCAATGTTCAGTCATTATGCACCTTGAATAGTTTTTCCCCTAACAAAACTAATATAACAGCTCAGCCTTGTGTTGCTGTAAAGCCAATTATTCATGATCCACCAACCAAGCACCCTGCAGTCAAAGATCCCAGATCTCCACCAGTTCCTCTTTCAAGTGAGATCATCTTTGATGATCCCTGGATGAAAAGGGATTCCTCCAAATCTGAAGAACTTGTCTGTGATGTAAAGCTAGAGAAAGGAACATCTGATTCTATAAAGAGCAAAAGTGTGTTCGACAGAAACAGTTCAAGCAGTTGTGAAGCAGCAGGTTCTCCTGATTCCTTCAAGAGGGTTGTAGATGGTTGTGAAATGGTTCTAAATGCTTCAGAAAGCATAACTCCTGTGTTTTCAGCTAACATTCTCAGGACTGGCAGCCTTCCTAGGGCTTGGCATCGGCTAAACAAGCAGGATGACCTTGATGACTCTTCCTATCACTACACAAGTGGAGAATATAAAACCCTCGGAGTTACTACATCCACTCCCTGTAGTCCTCGAGCCACACTGGAGCGGAGGGGATCATCTGGAAGGCAAGGTTTCTTCACTCGTCCAAAAGGAATCCCACCCTTACCACCTGTGAGGAAGTCAAGTCTTGACCAGAGAAACAGAGCCAGTCCCCAGCATAATTCAACAAGTAACCAGGGTCCAAACCTTCACTTGTCTTTCTTGGGCAGCACACCAGAGGATCTGGGTTTAAATGGTAAACAAACAGGACCAAATTTTGAGAGTAGCAGGCTCTTCAGTGCCAAACTCGAGCTGTTAGCAAACAGAACCAATTCTCTAGGAAGATCCCATGGTGCCCACTATGATTGTCATTCCCTAGAGAGAGGGGAGAGCCTGATGCTTGTTGGATCTAAAGCAGCTGTAGTGAGAGATAGCACCATGCCCCGTGTTGGCAGAAGCCTCACGCGAAACTCTGTCTCCTCTCCGACCAATGGACCGAACTGCAACTCCAGTGTAACACAGTCACCCAAATCAGGCCAATCCAAAATCTCAGCTGTTACCAAACTCCTCATGGCCAGTCCTAAGTCTCGAAGCCTTTCCACGTCTAGCACCAAGACCTTGAGCTTCTCCACCAAATCTCTTCCACAATCCGTAAACAGGAGCTCCAGCCTGTCCCCTAATGGAAAGAACCCAAACCCAAATTCCTGGTCAACTCAATCACTGAGCCGCAACAGGGGATCAGGACTTGCCTCGAAGCTGCCTCTTAGAGCTGTAAACGGACGAATCTCAGAACTTCTGCAGGGCAGTGCTGGCCAGGCCGGTCACGGACGAGGTACATGCAATACTGAGGAAAAAGGAGGACCAGTCCAGGGTGAGGAAAGGCAAGTGGTCCATACTTTACCATCCCCTTACAGTAAGATCACTGCTCCACGGAGGCCACATCGCTGCAGCAGCGGCCACGCTAGTGACAACAGCAGCGTTCTGAGTGGAGAGCTGCCTCCAGCCATGGGGAAAACTGCCCTCTTCTACCACAGTGGGGGCAGCAGTGGCTACGAGAGCATGATACGTGACAGCGAGGCCACAGGAAGCGCGTCTTCTGCTCAGGACTCTATGAGtgataacagcagctcagttaGTGGACGGAGGAGTctaaaaaatgcaaagaaaaggAACAATACAGGCACCCAGCGAAGGCGCCTCATTCCCAATTTGACCCTTGACCCCATTTCTCCAGTAAGGAAGCCAATCCTGAGCCCTGGAGTGCGCTGGGTCGACGGTCCTCTCCGCCCCCCTCAGAGGGGCGTGGCCGAACCCTTCGAGATTAAAGTTTATGAGATCGACGATGTGGAACGTCTGCAGAGGAGGCGGACCGCCGGCAGTAAGGGCGTGGTGTATTTCAGCGCTAAGCTAAAGATTTTGGAGCACCGACAGCAGAGGATTTCAGAGATACGAACAAAATACGACTGGCTGAAGAAAGAACTGgaacaaaccaaacagcacCTAATGCTCGAGCCCGAGAAGTGGAGCGCCGAGTTCGATGTGGAGCCGGTGTTCGAGGTCGACTCTCTGGAGTACTTGGAGGCGCTGGAGTTCGTCACACATCGGCTGGAGAATCGAgttaatttctgtaaagctcaCCTGATGATGGTCACATGTTTCGACATCACGTGTCGCCGACGGTAACCATgcaggaaaacaggaagtgcagtAGCTTCagtgtatgtaataatataaaggTGGATCAGAAACAGgtaataaatcaaacaaacaggaaacgcaaatgtaatttttaaaaagcggATTTGTTTGAATGTAAAGTTGGATTTCTGAGAGATGAGAATCGAATCAGCAACTTTAACTTTTATTCCACAGTCAAcgttaatgttattatttattaagcaGCCGTGTCACATGACCTGAGCGGTATCCCAAACACTAGTTAGCTGATTAGCTAGCAAAGTCATGATGTTCTGAAACAATTGATTCTTTAAGTTTTTAATTAGCACTGGGAAGAAACTCACATAGACCTTCGAATGGGAATTTTTGGATCTGGAATTACAGGATCATTCCCAAACCTCCCACATGACATGAATTCCACATTAGCATGCAGActttctgcttttctcacaTGTTAATAGTGTTGAGAAGGAACAGGTATTTTACCAAGTGTTTAGTGCTGGACAGAaacaggacgtgctgttagggGATAAAGGGGCTGTAAATAGTGTGCTTGCGTGTTTTATTAGAACGAGGCCTGATTAAGAggcagaaatgaatgaaaagagaaaaaaacagaacaaagaaGATTAAAAAGGAACAAAGTGCCTTGAGAATAATTTTAGTATCATGATGACTTGTGTACAGACGGTGCTCgcttaaacaaaatgaaacaaaaaaaaacaaaaaaacagaaaatagaacaaaaagaGCTTGtttaattcagtgttttatcCGTCGGGTTATTTGTACTTAACGTATTCGTAAATGCAACTTGTTACGtgtgattttaattattattattatttttttagatttttcacTCAAAGAGACCACACAGAGTCAAACCATATTTAACTGCATTttaggaattaaaaaaatcagtaaaagaataaaaatctaCAATATTAATGAGTTTTTATGGCACTCTGTTTTAatctcaaaaattaaaaaaaagaagatgatggatttttaaaaaggaacTGATCATCCAACACACTGCGATATACAGCACACTCCATACTGAGGCTAGGgcttaggggttagggtgtagggtgtaggggttagggtttagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205050 lncRNA upstream 2207 29168766 ~ 29173464 (+) True LOC117598323
XR_004578993.1 lncRNA upstream 2576 29168834 ~ 29173095 (+) False LOC117598323
TU205073 lncRNA upstream 5072 29169874 ~ 29170599 (+) True G173237
TU205043 lncRNA upstream 36793 29066842 ~ 29138878 (+) False kif28
TU205270 lncRNA downstream 717 29244073 ~ 29244961 (+) True G173373
TU205271 lncRNA downstream 1987 29245343 ~ 29245565 (+) True G173374
TU205283 lncRNA downstream 32606 29275962 ~ 29304413 (+) True G173386
TU205312 lncRNA downstream 110769 29354125 ~ 29357731 (+) True G173408
XM_034307891.1 mRNA upstream 18123 29150637 ~ 29157548 (+) False LOC117598241
XM_034307786.1 mRNA downstream 88900 29332256 ~ 29344637 (+) True tfb2m
XM_034308250.1 mRNA downstream 103098 29346454 ~ 29359619 (+) True LOC117598322
XM_034308114.1 mRNA downstream 116653 29360009 ~ 29368790 (+) True LOC113525415
XM_034308251.1 mRNA downstream 126576 29369932 ~ 29376033 (+) True LOC117595705
TU205058 other upstream 36895 29093491 ~ 29138776 (+) False nrde2
TU205054 other upstream 102582 29069720 ~ 29073089 (+) True G173221
trnak-uuu_7 other upstream 1450392 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403450.2 other upstream 1710022 27156343 ~ 27465649 (+) False nrxn3a

Expression Profile