Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034308323.1 |
| length | 1155 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 11 |
| gene id | dnajc17 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 20261608 ~ 20313158 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578952.1 | lncRNA | upstream | 22969 | 20237101 ~ 20238639 (+) | True | LOC117598257 |
| TU199791 | lncRNA | upstream | 52015 | 20207984 ~ 20209593 (+) | True | G168783 |
| TU199788 | lncRNA | upstream | 56604 | 20201607 ~ 20205004 (+) | True | G168780 |
| XR_004578994.1 | lncRNA | upstream | 62684 | 20197157 ~ 20198924 (+) | True | LOC117598324 |
| TU199715 | lncRNA | upstream | 112980 | 20145218 ~ 20148628 (+) | False | zbtb42 |
| XR_004579010.1 | lncRNA | downstream | 34382 | 20347540 ~ 20348832 (+) | True | LOC117598343 |
| TU199869 | lncRNA | downstream | 129217 | 20442375 ~ 20442632 (+) | True | G168850 |
| TU199855 | lncRNA | downstream | 130632 | 20443790 ~ 20443933 (+) | False | fsip1 |
| TU199853 | lncRNA | downstream | 131086 | 20444244 ~ 20453805 (+) | False | fsip1 |
| TU199991 | lncRNA | downstream | 256718 | 20569876 ~ 20572563 (+) | True | G168938 |
| XM_026934514.2 | mRNA | upstream | 113600 | 20142714 ~ 20148008 (+) | False | zbtb42 |
| XM_026934515.2 | mRNA | upstream | 113600 | 20143601 ~ 20148008 (+) | True | zbtb42 |
| XM_026934419.2 | mRNA | upstream | 246714 | 19988484 ~ 20014894 (+) | True | xgb |
| XM_026934008.2 | mRNA | upstream | 277367 | 19941913 ~ 19984241 (+) | False | LOC113538714 |
| XM_034307749.1 | mRNA | downstream | 52016 | 20365174 ~ 20444472 (+) | True | fsip1 |
| XM_034307747.1 | mRNA | downstream | 86844 | 20400002 ~ 20444472 (+) | False | fsip1 |
| XM_034307750.1 | mRNA | downstream | 86844 | 20400002 ~ 20444472 (+) | False | fsip1 |
| XM_034307748.1 | mRNA | downstream | 86852 | 20400010 ~ 20444472 (+) | False | fsip1 |
| XM_034307746.1 | mRNA | downstream | 208437 | 20521595 ~ 20526854 (+) | True | LOC113530103 |
| TU199644 | other | upstream | 218673 | 20042477 ~ 20042935 (+) | True | G168650 |
| XR_004578926.1 | other | upstream | 339207 | 19913633 ~ 19922401 (+) | True | LOC113538658 |
| XR_004578927.1 | other | upstream | 346899 | 19913633 ~ 19914709 (+) | False | LOC113538658 |
| XR_004578946.1 | other | upstream | 375099 | 19879735 ~ 19886509 (+) | True | zfyve19 |
| TU199113 | other | upstream | 574017 | 19679315 ~ 19687591 (+) | False | G168191 |
| XR_004578908.1 | other | downstream | 208437 | 20521595 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578910.1 | other | downstream | 208437 | 20521595 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578911.1 | other | downstream | 208437 | 20521595 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578909.1 | other | downstream | 208437 | 20521595 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578906.1 | other | downstream | 208437 | 20521595 ~ 20527951 (+) | False | LOC113530103 |
