RNA id: XM_026918986.2


Basic Information

Item Value
RNA id XM_026918986.2
length 5560
RNA type mRNA
GC content 0.51
exon number 39
gene id eif2ak4
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20843798 ~ 20896411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGTTACGTCAGTCCTGCGACGGTAAAGACATGACGACTTCCACGCGCCAGCTTGCAAGTTGTGGTTTTCCTGCGCGACGTTTCTTTATATGCTTACTTTAAGTTTGTAGCCGCCATGTTTTTGACATTAGGGTGTTTTGCTGACTTCCTTGTGGAAGAACGGTTAATATGCTAGTGTGAGAAGTTTGTTTCCGCCACTTTGTTTTGAAAGGGACGTGAGCGAGATATGTGTCCAGTGCCACAGAATAATGAGCGGTTCTCTGCTTAACTCTCCGGATGGAAATGAAGACTATGCAGTGCAGCAGGAAAATGAGCTGGAAGCCCTGGCGTCCATATTCGCAGATGATTTTCGGGACATCCGGACTGAACATCCGTGGAAGATTAAGCGTCCTCCAGAAGTGTACCTGTGCCTGCGCCCTAAAGGTCTGAACCATGGCCAGGAGTGTTACGTGACTGTGGACTTGCAGGTCAAATGTCCACCGACGTATCCTGACGCgcctccagAACTTGAACTGAAGAATGCCAAAGGTCTCTCCAATGACAAGCTTCAAAACCTGCAGAGTGAGCTGGCCAAACTGGCCTTGGAGCGATGTGGAGAGGTGATGATCTATGAGCTAGCAGACTTTGTGCAGGGCTTCCTTACAGAACACAATGTTCCACCTTCTCGCTCCTTCCATGAGGAGATGCTGAAGAATCAGAAGCGGCAGCAGGAACGTCTGGCCCTCGAGGAGCAGCAGAGGCTTGATCAGCGTCGCAGGCAGAAAGAACAGATGCAAAATGAGATACTTGCTGAAATCCAGAGACGAGAAGAGGAGAAacgagaggagaagagaaagaaagagttggCCAAGTTGGAGCGTTTGGAGAGTGTGGCTCAGCCGAATGCAGGAAGCCCAACGTCGGGTGGCGTCAGTTCCCCTGTACCTCCCAATGAGACGCAGGAGAACCGAAAAGGAGCTTCAAACAGACGTCGCACCACTTCCAGCAGCAGACACAGGCGAGACACGTACAGCGAAGACAATCCAAGTCCTCATGAAGTCCTGCACTTCAGCAGTAGCGCCATGGGCGAGATCCTGGTTCACAGAGGAAAATGTATAGgcgAGAGTGAGAGGCTGGGCCGGAGTGTGTATTACGCCCTCAATGCAGCCACGGGAGACTTTGCTGTTGTGTATGAATGGATCCTTCGCTGGAACAAGAAGATCGGGAAATTCTTCACCAGCCAGGAGAAGGAAAAGATcgaaaaatgtaaaaaacagATCCATGGAGCAGAAAGTGAGCTGAACTCCCTGCTGAAGCTGGACCACCCCAACCTGGTGCACTACCAGGCGTTGAGCTACAGTGAGCGTGAGGACTGCTTGGTGGTGGATCTCCTGGCTGAGCACGTGCCCGGTAGCAGCCTGGCTCAGAGCCTCTCTGCTGGAACTCCGCTGCCACCCGATCAGTTGAGGCACCACGCCGCCCAGCTGCTCGCCGCACTTGACTACCTCCACACCAACTCGGTGGTTCACAAGCAGCTGGCGGCTTCCTCTGTCCTTCTCGATGCCCAGGGCAATGTGAGACTGGCTGACTACAGCCTGGCTAAACGGTTAGGAGACATGTGCAAAGAGGACATTTTCGAGCAGGTTCACGTGCGCTTCAGCGAGGATACGCTGCCCACACGCACCGGCAAGAAAGGGGACATATGGAGCTTCGGGCTGCTTCTCATGGCACTCACTCAGGGACGCGAGGTCAAGGAGTACCCTGTGACCGTTCCCTCCAGCCTACCTGCTGATCTTCAGGACTTTCTCAAGAAgtgtgtgtgtcttaatgATGCTGACCGCTGGAACACTCAGCAGCTGCTAGAGCACTCCTTCTTGCGCCCACCTTCACCAAAGAGCCTTCCTCCATGCCAGGAGCCCAGTCCAGAAGACATGGATGTGGATTTTGCATCTACGGTTATCCCGCGGAGTCACCTTCTCAGCGCCCCTTTCAGTACAGTGGTGCAGAAGCAGTTCTCCCGTTACTTCAACGAGTTCGAGGAGCTCCAGCTGCTGGGAAAAGGTGCTTTTGGAGCCGTCATCAAGGTCCAAAACAAGTTGGACGGCTGCTACTACGCCGTCAAACGGATCCAGGTGAACCCGGCCAGCAAGCAGTTCCGCCGCATTAAGGGAGAGGTGACCCTCCTGTCACGCCTGAACCATGAGAACATTGTGCGCTACTATAACGCGTGGATTGAGAGACATGAGGCCCCGTCCACAGGGGTGGAGAGCAGTGACACGTCCGAGCCAGCCAGCACCCCTGAGCGGCCCACACGACCTGCAGCTCCGCCCCGCCTCAACGAGCTCGGCCTCCTCGACAACGTGGAGGACGATGCACCCCCGCCAGCACTGGCCAGTTCGGTGGAGTGGAGCACGTCTCTGGAGAGGTCATCCAGCGCCAAGTGCAACGCCACTGACTCCAGTGAcgaggatgatgaagatgaggcAGATGTGTTCTGTCCATCTTTCCTCCCGTCCAACAGCGACTCGGAAAGTGACATCATCTTTGACAATGGTGATGTGAGCAGAGACAGTATTGTGCAGGAAGAGCTGAGTAAAAGGCAAGGAGTGGACACCACAGAGAGCTCAGTATTGGAAAGGCCTCCTCTTATTGCACATTACCTCTACATACAGaTGGAGTACTGTGAAAAAAGTACTTTGAGGGACACAATAGACCAGGGCCTTTACCGGGACTGCAGTCGCCTCTGGAGACTCTTCAGGGAGATCCTGGATGGCATTGCGTACATTCATGAACAGGGAATGATACATAGAGATTTGAAGCCTGTCAACATTTTCCTGGACTCTCGTGACCATGTCAAGATTGGAGACTTTGGCTTGGCTACTGACCATCCAGCTAGCATGGCCTCAGGCATACTGGAGCTGGAGGACAACAGCTCAGGTCTCGTCCTAAAATCAGACCCAACAGGTAACATGACGGGTATGGTTGGCACTGCCCTGTATGTCAGCCCAGAGGTCCAAGGAAACACAAAAGCAACTTACAACCAGaaaGTGGATCTGTTCAGTTTGGGTATCATCCTGTTTGAGATGTCCTACAGACCAATGACCACGGCTTCTGAACGCATCTCTGTCCTCAGCCAGCTCAGAACGGAGTCCATTGACTTCCCTGAGGATTTTTTTGAATATGAGTATGGAACACAGAGGAAGGTGATTTGCTGGCTGCTGAACCATGACCCGGCCCTGCGGCCCACAGCGGTGGAGCTTTTGAAGAGCGATCTGCTCCCTCCTCCTCAAATGGAGGAATCGGAGCTCCACGAGGTGCTGCAGCACACCATGGCTAACGTCAATGGCAAGGCCTACCGCACCATGGTGAACCAGCTGTTCTCCCAGAACAACTCTCCAGTGATGGACTACACATATGATATTGACATTTATAAGGGCAGTTTTAATTTCTACAGCGCAAAACTGCAGCAGTACGTGTATGAGACAATCACCAGGGTCTTCAGAAAGCATGgtgCAATAAGGTTACAGACGCCACTCCTCCTGCCCAGGAACAGGAAGCTGTATGAAGGCTGTGAGATTGCCTGCTTTATGGACCACAGTGGCATGCTGGTCACTCTTCCCTATGATCTGAGGaTCTCATTTGCCAGATTTGTGGCCAGAAATGGCATTTCACACCTCAAAAGGTACAGTATCGAGCGTGTGTTCAGGCCACGGAAGTTGGACAGGGCTCATCCCAAAGAGCTGCTCGAGTGTGCTTTCGACATTGTCGTGCCTTTGACCAGCAGCTTACTCCCTGACGCCGAGACCATCTACACCATCTGTGAGGTTATCCAGGAGTTCAGCGCGCTCCAGGAAAGGAACTACATTATCTATCTGAACCACACCAGCCTGTTACGAGCCATTCTGCTGCACAGCGGTGTGCCAGAAGACAAACTAAACCAGGCTTCCAATATACTGTGTGATGCCACGAGTGAGAAACTGACGAAACGCGAGGTGGAAGCCAAGTTCTGCAACCTGTCCTTGTCTAATAACAGTTTGCAGATGCTCTATAAGTTCATAGAGCAGAAGGGAGAGCTGCGGGAGCTCAGTCCTCTCATCAACTCTATGGCTAAACAGAAGACTGCTGCAGTCACACAGCTGGCCAAGCAAGGCCTTAAAGATCTGGAGGAGCTTACAGGTCTGCTTAAGAGACTAGGAGTTAAAATACAGGTGGTGGTCAATCTGGGCCTCATCTACAAGGTGCAACAGCACTGCGGGGTCGTCTTCCAGTTTGTGGCCTTTATTAAGAAACGCAAACGTACTGTTCCTGATATAATAGCAGCCGGAGGACGTTATGACCACCTGATGCTGGACTTCCATGGACCAGCACCCATTGCTCCCTTGGCCTCGGCGGTGGGGGCGAGCGTAGCCCTTGATAAGATATGTAGTGCCGTGGCAGCCATGGAAGAACCGCCTCCTGTAAGCTCGTGTGATGTGCTGGTGGTCCCTGTAGGCCAGACGTCAGTGAGCAGAGCCATTCATGTCATGCAGAAGCTCTGGACTGCTGGAGTGTCAGCTGATTTGGTTTACGATGTGTCACAGTCTCAGGAAGCTCTCCTGGATCACTGCAGGCTTGCAGGCATTACATTCATGGTTCTGGTCTCTGACAAAGAGGGCACCTATGTGAAAGTGAAATCTTTTGAGAAGGACCGTCAGTCAGAAAAGAGGATTCCAGAGTCAGATTTAGTGGATCACATCATCCAAAAATGCCGGACCAAACTGGCTGATGAGAGAAGCCGAGAGGTATCGGAGGGAGGGTCTCTCCAGAATCCTAAGGGATCACTCCTGTTAAACTCAGCAGGTTCATCGGAGCAGCACGGGGGAGGCGTAACAATGAACATGAATGTGAACCTGGTTACACCGGAAAAGGTTTCGGCCAGCACACGACGACGCTATGAGACACAGATACAAACCAGATTGCAGAATCTTGGCAACAGTTTGCAGAACAGGAGTAATGACATCGAGGTGTTGGCTGTTGACCTGTCCAAGGAAACCCTCATCAACTTCCTGTCTCTGGAGTTTGATGGAGAGGAGCAGTTCAACATCAGCGTTAAACAGTTACTGTCACACATGCCCAAGCAGCGTTATCTCAAGTCCATCTGTGAGGAGATTCACCATTTCAAGATGATTAAAAGGGTTGCAGTTGTTGTCTTGTACAGTTACAGAGATGACTACTACAAGATTCTTCTCTAAACCGGACGTCACCGTTCTAGACAATTTATATTCAAAAGACTCTTGTAAGGACTGAAGTTAAGTATGTTCTTGATTTAGATTTGCAGggggttttctttttattggtAATGACTGCAGTTTACATCTCTGCCAAAGGTACAAATTGTTCATTGTCACAGGGGTCCAGTAATTATTACCAGCTTTGAGTCTCTGCATTATACTGTTCCCAAGTCTGAATTCTCTCCGTAGTGATATCATGTCAATctttattttccaaaacagaGAACTGTCTAAGAGGATTTCAAAAGTGTTAACATTTGCTGTATTATAAATGCTAAAACAGATGCattaaaacatgtatttttcCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200101 lncRNA upstream 2930 20832846 ~ 20842174 (+) False G169046
TU200106 lncRNA upstream 2930 20832846 ~ 20842174 (+) False G169046
TU200109 lncRNA upstream 2930 20832846 ~ 20842174 (+) True G169046
TU200100 lncRNA upstream 21721 20741344 ~ 20823383 (+) True G169045
TU199993 lncRNA upstream 271826 20573032 ~ 20573278 (+) True G168940
XR_004579003.1 lncRNA downstream 208532 21104943 ~ 21107399 (+) True LOC117598333
TU200384 lncRNA downstream 285446 21181857 ~ 21183778 (+) True G169287
TU200432 lncRNA downstream 294755 21191166 ~ 21196292 (+) True G169320
TU200673 lncRNA downstream 642839 21539250 ~ 21539498 (+) True G169543
TU200723 lncRNA downstream 755230 21651641 ~ 21651902 (+) True G169575
XM_034308304.1 mRNA upstream 31375 20738919 ~ 20813729 (+) True LOC113529967
XM_026919861.2 mRNA upstream 300592 20540898 ~ 20544512 (+) True zgc:194887
XM_026919862.2 mRNA upstream 304806 20535056 ~ 20540298 (+) True LOC113530108
XM_034307746.1 mRNA upstream 318250 20521595 ~ 20526854 (+) True LOC113530103
XM_034307748.1 mRNA upstream 400632 20400010 ~ 20444472 (+) False fsip1
XM_026919026.2 mRNA downstream 248464 21144875 ~ 21181559 (+) True tecpr2
XM_034308203.1 mRNA downstream 297507 21193918 ~ 21205161 (+) False rcor1
XM_034308199.1 mRNA downstream 297564 21193975 ~ 21205161 (+) True rcor1
XM_034308200.1 mRNA downstream 297564 21193975 ~ 21205161 (+) False rcor1
XM_034308198.1 mRNA downstream 297565 21193976 ~ 21205161 (+) False rcor1
XR_004578912.1 other upstream 313882 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other upstream 313882 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other upstream 313882 20528527 ~ 20531222 (+) False LOC113530103
XR_004578905.1 other upstream 317153 20521595 ~ 20527951 (+) False LOC113530103
TU200725 other downstream 773496 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 922870 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 1965396 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 1965399 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 1965616 22862027 ~ 22890770 (+) True LOC113533992

Expression Profile