RNA id: XM_026919030.2


Basic Information

Item Value
RNA id XM_026919030.2
length 5217
RNA type mRNA
GC content 0.46
exon number 23
gene id inf2
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20219874 ~ 20255875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtgagagagagagagagattgtgtgtgtgagagagagagagagagagagagagatattgtgtgtgtgtgagactacaGTATGAATCATGGGCTCACATCTGCGCTCCATCACAGTAGCGATATAAACGCGTCTGGAGCTCTCCTGCTGTGATGTGGATGTAAGGGGTTAAACACGGTACTGAAACAGAGttcTTCCTCCATCATCATCTGAATCGTCTTCATCATGTCAGTGAAGTCAGACAGAGTGCAGAAGAAATGGGCGGTAGTGAAAAGTCACCTGGGCTCATCTCAGGACTCTGACTCAAGCACACAGGAGGCCAACCTAGAGAATGCTGAACCCGAGCTGTGCATCCGCCTGCTGCAGGTGCCCACCGTGGTGAACTACTCAGGCCTGAAAAAGCGGCTGGAGGGCAGTGATCAGGCATGGATGGTACAGTTTCTCGAACTGTCAGGCCTCGACCTGCTGTTGGAGGCCCTGGACCGTCTCTCGGGTCGCGGCTGCTCGCGCATCACCGATGCACTGCTCCAGCTCACCTGCGTCAACTGTGTCAAGGCAGTAATGAACTCATCCATAGGGATCCATTTCATCATGGAAAATGAGGGTTACGTGCGTAAGCTCTCACAAGCTCTGGATACATCCAATATCATGGTGAAGAAGCAGGTGTTTGAGCTGCTGGCTGCCCTCAGCATGTTTGCTGCAGAAGGATACACCTTGGCCCTGGACTCTCTGGATCACTATAAAGCTGTAAAGATGCAGCAGTACCGCTTCAGTGTGATCCTGAATGAACTGCAGAACACAGATAATGTGCACTACATGGTGACACTGCTGAGCTTCATCAACGCGCTCATCTTCAGCACTGAAGACCTGCGCCAAAGGGACAAGATGCGCAAAGAATTCATTGGTTTACAGCTGCTTGACCTCCTGCCGAAGCTGAGagagcAGGAGGATGAAGACTTGATCATCCAGTGTGAGGCATTTGAGGAGGCCATggctgaggatgaggaggaactGTTGAGGCTTTATGGAGGCATTGATATGAGCAACCACCAGGAAGTCTTCATCACTCTGTTTAACAAAGTGAGTAGCTCCCCTGCATCATTGCAGCTGCTGTCCATCCTTCAGACTCTGTTGTTGTTAGGACCTGAGCGAGCAGACATCTGGCAGGCCCTGGAGGCTCTAACAAACCGTGCAGTCCTCCTGGCCCAGAACTCTCAAATGGACTCCTGTGAGACGATCATGCAGCGGCTTGTCTTTTCCAAAGAATCATCCACTGGTTCTCATCATGTAGATGCTCCACCTCAAAAGAAGGCAGATAAAGCAATTCAGACCGAGCTAAATGAAGGGGAGAAACAATCTTTAAGAAGTATGTCCATGACCAACCAAGCAGCACCCCTCAGCTCCACAGAGAAGCCCTGCAACACTCAGCCTCCTCCTCCcccacctcctccaccaccagTACCCAGTTTGGCggcacctcctcctcctccacctccaccgcCACCTTTACCAGGCATGGGTTGtgttcctcctccacctccaccaccattCTTACCAGGCATGGGTGGTGTTCCTCCCCCACCTCCACCACCTTTACCAGGCATGggtgctcctcctcctccacctttACCTGGCATGggtgctcctcctcctccacctttACCTGGCATGggtgctcctcctcctccacctttACCTGGCATGGGTGCTCCCCCACCTCCGCCTTTACCTGGCATGGGAATGCCACCACCCCCTCCACCCTTCCCAGGGATGGTACCTGGAGGCCCTCCACTACCACCTCCACTCCCTGGCATGCCCTGCCCACCTTGCCCACCTCCTATGGGAGGAGATGTAATAGTAGCCCACAATGTTCAGGTTCTTGGTAGAGCTTACAGCATGCCAGTGAACACTAGTCGATATCCCACACTTAGGATGAAGAAGCTCAACTGGCAGAAGCTAAACTCCAGAGCAGTCACTGATGGTTGCAATATATGGGCCTCGGAACAAACAGATTCCCCTCTGGAACCTGACTACACCAGCATCGAGCAACTCTTCAGTCTCCCAGTGACTGAGCCCAAAGAGAAAGGCCCGGCTGCTCCTGCCAAAAAAGAACCCAAAgaaATTTCCTTTATTGATCCCAAGAAGAACCTGAATCTGAATATATTTCTCAAACAATTCAAATGCTCTAATGAGGAGTTTGTGGACATGATTCAGAAAGGGGATCGTTCCAAGTTTGATGTCGAGGTGTTAAAACAGCTGCTGAAGCTCCTGCCAGAGAAACACGAGATTGACAACCTGAACTCTTTCCAAGGAGAACGAGACAAGCTTGCCAATGTCGACAAGTTTTACCTATCACTCCTCGCTGTTCCCTGcTATCAGCTGAGGATTGACTGCATGTTGTTGTGTGAGGAGACTGTATCTGTGCTGGAGATTCTGAAACCCAAAGCACAGCTGGTGAAGGAGGCTTGTAAGAGTCTCAGAGCTAGCGCACTTCTGCCCAGTTTCTGCAGGTTAATCCTTCGAGTAGGAAACTTCCTCAACTATGGAAGTCATACAGGAAACGCTGAAGGATTCAAGATTAGCTCCTTGCTGAAGCTGACGGAAACCAAAGCCAACAAGGGCCGTATCACTCTGTTACACCACATCCTCGAGGAAGCAGAGTTGAACCACCCTGAGCTTCTGAACCTTCCTGACGACATTGAAAGCTGTGAAAAAGCAGCAGGAATAAACCTAGATTGCATTCAGAGTGAGGCAAATGCACTGTCCAAGCGTTTAAGGGACACAGAGAAAAAGGTCTCTTCATCAGTTCAAGATGTAAAAGATCAATTTTTAGGTATTATCAAGGAGAACCTTCAGGCATGTAAAGATTTGGAGGACTGCTTTGCTAACattgagaagaagaaagaagatcTGGCTCAGTACCTGTGTGAGGATGCTGCTCAGCTGTCACTAGAGGAACTCTTTAGCAACATCAAGACCTTCCGAGGGCTTTTCCTCAAAGCATTAAAGGAGAACAAGATCCGTAAGGAGCAAGCTGCCAAAGcggagaagaggaagaagcagctggcagaggaggagTCCAAGCGACAGAAAGGAGAGAATGGCAAGATCATTAGAAGAGGTGGTGTGCCTCAGGAGGATGGCTGCATCATTGACAACCTGCTGGCTGACATCAGAAAAGGTTTCCAGCTTAGAAAGACCAGGCCAAGGTGCGAAACGGAAAGTGCCCCCTCTAGTGAAATGCATAGGGACACCGCACCAAGTGTCAAATGTGCAGAAAAAGAAGTCACATCAGGTGTAGCTCAGGACCTCCCTCCTCGGCCAGAGGAGACAAGCGTCGAAGATCCAGTCAGCGCTTCCTCCACCGGCCCCAGAGGAGAAGCAGCAGTCACAGCAACTGGTAATGATGCTCCGCTCACACATCAAGAGACCCAACCAGGCCTCTCCACTGAAAACACCCAGTCTAACCATACAGCTACACCGCTCAAGCCTTCAGCAGAGTCTCAGGATCGCTTAAAAGATAATGTAGAAACACAAACTCTTCCAACTGAAGTCCTTAGTGAGAAAAACTCTTCCACAGAGACTCCACTAACAGAAAAGACCTCTGTGGACACACCATTCTCTACAGTGCCTACATCTATTGTGAATATATCTGCAGCAAAAGATGGCACACAACAAAACTGTAACTCTAATAATAGCCAAGTCAAAGATGACCAAGCTTCTATTGATACCACACCCAAAAATGTGACAAACGTCAATTCTGGTGCTCATACTGACTCGAATGTGAAAGTACATGGTACGGTCACCAATGAAATAGTTCCAGAAAGCCAAGAACAGAATGCAAAGAGACACTCAAGCAAAACTCAAGTAGACTCTAGCAGCACCACTGAGTCATCTCTTACCAGTAACAGTAATACTGAGGTGCCGCGTGAGCCTGATGTACCTGACGGAGCGTGTGCTGTGGATGGAACTGCTCCCCCGAATCCTCCCACCTCTCAGCCGAAATCACGCAAGCTCATccgaggaaagaaaaaaagcaataaagaaGCTGAGGGTAACAGCGAAGGAGACAGTAAGCATAAAACGACCTGTGTGTTGCAGTAAGGGAGACCCAGGAAAGGGAAACCACAAGGGAAGAGATGAAGCTTTAACTGAATAGGTGTATTCATGAACAACTTTTAAAGCACCCTTTAactgctttcacacacaacactcagaAACCAAGGGCTGAGCACACAGAGCAGAATCAAAAGTTTTGTGTGTGCCGATGGACCACGTGCTGATATTTAAGGAAGaaaaagcattatttttgtaaaagctTACTTGTGCCCTTTAGAGTTGACTGTGGCCAAATATTTCAGTAGTTCGTGCACTATATTATGATGAGCTAAATCTTTGTTTACATATAGAGATATATCTAGGAGCAATGgacaaaaaagaaatcaaaataatttgtatatattGGAATTATGTGAGTTTACCAGTAATAGTTTAAGATGGCCCAGTGTTCCAGATTTGAATCAGAATTACATTGTAAGATTTTAGGTTAATagaatttcatattttaaacaaattgcaagttaaataacacattcagTATGTAATAATCAGAGTGAATGTATAGTATCtgtttaaaggaaaagaaagtatTCTATGATGTGGTTTGTTATAGCAATATAAGAGCCCAATAAGGTTGGCAGTGTTACTTTAAATCCCGTTTAATCTTGTTCAAACCTGTCTGGAAAACTGTCTGGAAATCCCATATTATATTTGCCTGTCTaagtaataatgtaaatgttatattCATGACTGACTGCTTAGAGTAAGTGTATGATGtgacctaagaaaaaaaatttagttgATATCTACCTGTTGCAAAGTGGTTAGTGAAATAAATACAGCAGTTGATGTATGCTATGGTTGgtgtaatttacataaaatgttcTGGATGGACTCTTAATTCAACCAACTAACAGTCTCTGTTACCAACTAAGAACActgtgttgggttttttttttttggattaagGCCAAAAGACAATGGATCAACATTTAACAATGTGCttttaatggatttttaattttaggcTATTCTCTGAGGTGTCTTTCATATTACTATACtttcaataaatacaatttattgACAAACTCATATCAAATGTATATCACCACCTGTTTTTATAATGACCATTTTGATAAAGCTGTCATCTATGTGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199761 lncRNA downstream 68571 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 69972 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 71138 20145267 ~ 20148736 (-) True G168756
TU199752 lncRNA downstream 113016 20106213 ~ 20106858 (-) True G168750
TU199749 lncRNA downstream 119302 20099127 ~ 20100572 (-) True G168747
TU199899 lncRNA upstream 42673 20298541 ~ 20301554 (-) False LOC113529462
TU199937 lncRNA upstream 187129 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 282994 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 291777 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 308287 20564155 ~ 20564706 (-) True G169118
XM_026920002.2 mRNA downstream 6912 20202119 ~ 20212962 (-) True adss1
XM_026933739.2 mRNA downstream 45796 20169130 ~ 20174078 (-) True siva1
XM_026934181.2 mRNA downstream 93535 20065720 ~ 20126339 (-) True akt1
XM_034308016.1 mRNA downstream 161665 20027293 ~ 20058209 (-) False cep170b
XM_026918654.2 mRNA upstream 42643 20298511 ~ 20301549 (-) True LOC113529462
XM_034308391.1 mRNA upstream 67646 20323514 ~ 20330746 (-) False gchfr
XM_026920020.2 mRNA upstream 67646 20323514 ~ 20330746 (-) False gchfr
XM_034307745.1 mRNA upstream 113266 20369134 ~ 20372103 (-) True LOC113530110
XM_026919852.2 mRNA upstream 188327 20444195 ~ 20453800 (-) False LOC113530102
TU199706 other downstream 201180 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 625097 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1253261 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1372178 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1837419 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 66896 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 309061 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 477062 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 558693 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1859697 22115565 ~ 22115876 (-) True G170023

Expression Profile