RNA id: XM_026919033.2


Basic Information

Item Value
RNA id XM_026919033.2
length 3481
RNA type mRNA
GC content 0.51
exon number 21
gene id inf2
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20219874 ~ 20255875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggggtgagagagagagagagattgtgtgtgtgagagagagagagagagagagagagatattgtgtgtgtgtgagactacaGTATGAATCATGGGCTCACATCTGCGCTCCATCACAGTAGCGATATAAACGCGTCTGGAGCTCTCCTGCTGTGATGTGGATGTAAGGGGTTAAACACGGTACTGAAACAGAGttcTTCCTCCATCATCATCTGAATCGTCTTCATCATGTCAGTGAAGTCAGACAGAGTGCAGAAGAAATGGGCGGTAGTGAAAAGTCACCTGGGCTCATCTCAGGACTCTGACTCAAGCACACAGGAGGCCAACCTAGAGAATGCTGAACCCGAGCTGTGCATCCGCCTGCTGCAGGTGCCCACCGTGGTGAACTACTCAGGCCTGAAAAAGCGGCTGGAGGGCAGTGATCAGGCATGGATGGTACAGTTTCTCGAACTGTCAGGCCTCGACCTGCTGTTGGAGGCCCTGGACCGTCTCTCGGGTCGCGGCTGCTCGCGCATCACCGATGCACTGCTCCAGCTCACCTGCGTCAACTGTGTCAAGGCAGTAATGAACTCATCCATAGGGATCCATTTCATCATGGAAAATGAGGGTTACGTGCGTAAGCTCTCACAAGCTCTGGATACATCCAATATCATGGTGAAGAAGCAGGTGTTTGAGCTGCTGGCTGCCCTCAGCATGTTTGCTGCAGAAGGATACACCTTGGCCCTGGACTCTCTGGATCACTATAAAGCTGTAAAGATGCAGCAGTACCGCTTCAGTGTGATCCTGAATGAACTGCAGAACACAGATAATGTGCACTACATGGTGACACTGCTGAGCTTCATCAACGCGCTCATCTTCAGCACTGAAGACCTGCGCCAAAGGGACAAGATGCGCAAAGAATTCATTGGTTTACAGCTGCTTGACCTCCTGCCGAAGCTGAGagagcAGGAGGATGAAGACTTGATCATCCAGTGTGAGGCATTTGAGGAGGCCATggctgaggatgaggaggaactGTTGAGGCTTTATGGAGGCATTGATATGAGCAACCACCAGGAAGTCTTCATCACTCTGTTTAACAAAGTGAGTAGCTCCCCTGCATCATTGCAGCTGCTGTCCATCCTTCAGACTCTGTTGTTGTTAGGACCTGAGCGAGCAGACATCTGGCAGGCCCTGGAGGCTCTAACAAACCGTGCAGTCCTCCTGGCCCAGAACTCTCAAATGGACTCCTGTGAGACGATCATGCAGCGGCTTGTCTTTTCCAAAGAATCATCCACTGGTTCTCATCATGTAGATGCTCCACCTCAAAAGAAGGCAGATAAAGCAATTCAGACCGAGCTAAATGAAGGGGAGAAACAATCTTTAAGAAGTATGTCCATGACCAACCAAGCAGCACCCCTCAGCTCCACAGAGAAGCCCTGCAACACTCAGCCTCCTCCTCCcccacctcctccaccaccagTACCCAGTTTGGCggcacctcctcctcctccacctccaccgcCACCTTTACCAGGCATGGGTTGtgttcctcctccacctccaccaccattCTTACCAGGCATGGGTGGTGTTCCTCCCCCACCTCCACCACCTTTACCAGGCATGggtgctcctcctcctccacctttACCTGGCATGggtgctcctcctcctccacctttACCTGGCATGggtgctcctcctcctccacctttACCTGGCATGGGTGCTCCCCCACCTCCGCCTTTACCTGGCATGGGAATGCCACCACCCCCTCCACCCTTCCCAGGGATGGTACCTGGAGGCCCTCCACTACCACCTCCACTCCCTGGCATGCCCTGCCCACCTTGCCCACCTCCTATGGGAGGAGATGTAATAGTAGCCCACAATGTTCAGGTTCTTGGTAGAGCTTACAGCATGCCAGTGAACACTAGTCGATATCCCACACTTAGGATGAAGAAGCTCAACTGGCAGAAGCTAAACTCCAGAGCAGTCACTGATGGTTGCAATATATGGGCCTCGGAACAAACAGATTCCCCTCTGGAACCTGACTACACCAGCATCGAGCAACTCTTCAGTCTCCCAGTGACTGAGCCCAAAGAGAAAGGCCCGGCTGCTCCTGCCAAAAAAGAACCCAAAgaaATTTCCTTTATTGATCCCAAGAAGAACCTGAATCTGAATATATTTCTCAAACAATTCAAATGCTCTAATGAGGAGTTTGTGGACATGATTCAGAAAGGGGATCGTTCCAAGTTTGATGTCGAGGTGTTAAAACAGCTGCTGAAGCTCCTGCCAGAGAAACACGAGATTGACAACCTGAACTCTTTCCAAGGAGAACGAGACAAGCTTGCCAATGTCGACAAGTTTTACCTATCACTCCTCGCTGTTCCCTGcTATCAGCTGAGGATTGACTGCATGTTGTTGTGTGAGGAGACTGTATCTGTGCTGGAGATTCTGAAACCCAAAGCACAGCTGGTGAAGGAGGCTTGTAAGAGTCTCAGAGCTAGCGCACTTCTGCCCAGTTTCTGCAGGTTAATCCTTCGAGTAGGAAACTTCCTCAACTATGGAAGTCATACAGGAAACGCTGAAGGATTCAAGATTAGCTCCTTGCTGAAGCTGACGGAAACCAAAGCCAACAAGGGCCGTATCACTCTGTTACACCACATCCTCGAGGAAGCAGAGTTGAACCACCCTGAGCTTCTGAACCTTCCTGACGACATTGAAAGCTGTGAAAAAGCAGCAGGAATAAACCTAGATTGCATTCAGAGTGAGGCAAATGCACTGTCCAAGCGTTTAAGGGACACAGAGAAAAAGGTCTCTTCATCAGTTCAAGATGTAAAAGATCAATTTTTAGGTATTATCAAGGAGAACCTTCAGGCATGTAAAGATTTGGAGGACTGCTTTGCTAACattgagaagaagaaagaagatcTGGCTCAGTACCTGTGTGAGGATGCTGCTCAGCTGTCACTAGAGGAACTCTTTAGCAACATCAAGACCTTCCGAGGGCTTTTCCTCAAAGCATTAAAGGAGAACAAGATCCGTAAGGAGCAAGCTGCCAAAGcggagaagaggaagaagcagctggcagaggaggagTCCAAGCGACAGAAAGGAGAGAATGGCAAGATCATTAGAAGAGGTGGTGTGCCTCAGGAGGATGGCTGCATCATTGACAACCTGCTGGCTGACATCAGAAAAGGTTTCCAGCTTAGAAAGACCAGGCCAAGCACCAAGTGTCAAATGTGCAGAAAAAGAAGTCACATCAGGTGTAGCTCAGGACCTCCCTCCTCGGCCAGAGGAGACAAGCGTCGAAGATCCAGTCAGCGCTTCCTCCACCGGCCCCAGAGGAGAAGCAGCAGTCACAGCAACTGGTAATGATGCTCCGCTCACACATCAAGAGACCCAACCAGGCCTCTCCACTGAAAACACCCAGTCTAACCATACAGCTACACCGCTCAAGCCTTCAGCAGAGTCTCAGGATCGCTTAAAAGATAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199761 lncRNA downstream 71472 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 72873 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 74039 20145267 ~ 20148736 (-) True G168756
TU199752 lncRNA downstream 115917 20106213 ~ 20106858 (-) True G168750
TU199749 lncRNA downstream 122203 20099127 ~ 20100572 (-) True G168747
TU199899 lncRNA upstream 42671 20298541 ~ 20301554 (-) False LOC113529462
TU199937 lncRNA upstream 187127 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 282992 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 291775 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 308285 20564155 ~ 20564706 (-) True G169118
XM_026920002.2 mRNA downstream 9813 20202119 ~ 20212962 (-) True adss1
XM_026933739.2 mRNA downstream 48697 20169130 ~ 20174078 (-) True siva1
XM_026934181.2 mRNA downstream 96436 20065720 ~ 20126339 (-) True akt1
XM_034308016.1 mRNA downstream 164566 20027293 ~ 20058209 (-) False cep170b
XM_026918654.2 mRNA upstream 42641 20298511 ~ 20301549 (-) True LOC113529462
XM_034308391.1 mRNA upstream 67644 20323514 ~ 20330746 (-) False gchfr
XM_026920020.2 mRNA upstream 67644 20323514 ~ 20330746 (-) False gchfr
XM_034307745.1 mRNA upstream 113264 20369134 ~ 20372103 (-) True LOC113530110
XM_026919852.2 mRNA upstream 188325 20444195 ~ 20453800 (-) False LOC113530102
TU199706 other downstream 204081 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 627998 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1256162 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1375079 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1840320 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 66894 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 309059 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 477060 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 558691 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1859695 22115565 ~ 22115876 (-) True G170023

Expression Profile