RNA id: XM_026919089.2


Basic Information

Item Value
RNA id XM_026919089.2
length 5050
RNA type mRNA
GC content 0.42
exon number 32
gene id LOC113529708
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22197553 ~ 22241003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCGGCTTTTCCCTGAGAAAGCACTCAGGCTTCCGTAGAACGTAGCGCGTGCGCACTGCTCGTTTATGCGGACGTGTTGTGGTGTTCAGCATAGTGAAAGTTGTAATTTGTGTACTTCGATGACACAATGAAAAGCAGATTCAATACAGTGGACATTAGGGCAGTGATTGCCGAGCTCAATgtcaaCTATGTGGGGATGCGAGTGTACAACGTCTACGACATTGACAGCAAGACCTACCTCATTCGCCTACAGAAgccgGACAGTAAAGTCGTCTTGTTGATCGAGTCGGGCATACGGATTCACTCCACAGACTTTGAGTGGCCCAAAAATGTCATGCCCTCTGGTTTTGCTATGAAATGCAGGAAACACCTGAAGTCCAGGAGACTGGTACATATAAAACAACTAGGTGTGGACAGGATTGTGGACATTCAGTTTGGCTCTGAAGAGGCTGCGTACCACCTTATAGTTGAGTTGTATGACAGGGGGAACATAATCCTGACAGATCATGAGTATACCATACTGAACCTGCTGCGCTTTCGTACCGCTGAGGCAGAGGATGTGAAAATTGCAGTGAGAGAAAGATACCCCATAGAGAATGCCAGGCCTTCTGAACCCCTTATCAGCCTGGAGAGgcTTAAAGATATTTTATCCAAAGCTCAGAGTGGAGAGCAAATAAAAAAGATTCTAAATCCCCACCTTCCATATGGAGGTACTCTAATTGAACACTGCCTTATAGAAGTTGGTTTTCCTGGTCTTTTGAAAATGGACTGTCAATTTAACATGACAGAAgCTGGACCAAAACTTATGGAGGCTTTGCAGATGGCAGAGAGCTATATGGAGAAAGCAGCAAACTTTAACGGAAAGGGTTACATCAttcagaaaactgaaaaaaagccaAGCATGACTCCAGACAAACCACATGAAGAGTTGCTCACGTACGAAGAATTTCACCCATTTTTATTTACCCAACACTCAAAGAGCCCATATGTTGAATTTGAGTCTTTTGATAAGgctATCGATGAGTTTTTCTCCAAGATGGAGAGTCAGAAGATTGATATGAAAGCACTTCAGCAGGAGAAACAAGCCCTGAAAAAGCTTGAGAATGTGAGAAAGGATCATGAGCAAAGGTTGGAGGCTCTACATCAGGCCCAGGAGGTGGACCGTTTGAAGGGTGAGTTGTTGGAAATGAATCTCCCCATTGTAGAGCGAGCTATTCAGGTGGTGCGCAGTGCTCTGGCTAATCAGGTGGACTGGGCTGAGATCAGCTTAATTGTCAAAGAAGCTCAAGCAGCTGGAGATCCCGTGGCATGTGCAATTAAAGAGCTGAAACTACAAACCAACCATATCACTATGCTACTGAAGAATCCATATATTGGCccagaggaaagagaggaacaGGAAGAAGTTTCAGAAGATACTAAAGAAGGCTCTGAGCAGCCAAAGGGgaagaaaaataagaataaagacAAAGGACAGAAGGGCAAGATCCAGAAGAATAAACCCATACTGGTGGACGTGGACCTTGGTTTATCTGCTTATGCCAATTCAAAAAAATATTATGACCACAAGCGGAATGCTGCCAAAAAGGAGCAGAAAACAGTTGAGGCAGCAGAGAAGGCCTTTAAGTCTGCTGAGAAAAAGACCAAGCAAACCCTTAAAGAAGTCCAGACAGTGACAACAATTCAGAAAGCCAGAAAAGTCTTCTGGTTTGAAAAGTTCCTGTGGTTTATTAGCTCAGAGAACTATCTCATCATTGCTGGGCGGGACCAGCAGCAGAATGAGATGATAGTTAAACGTTACCTGCGACCAGGGGACATCTACGTCCATGCTGATCTTCATGGAGCCACAAGCTGTGTTATCAAGAATCCATCTGGTGAGCTTGTTCCCCCACGCACACTAACCGAGGCTGGAACAATGGCTGTGTGCTACAGTGCTGCTTGGGATGCCAAAGTGATCACCAGTGCTTGGTGGGTCCATCATAACCAGGTATCCAAAACTGCACCAACAGGAGAGTACTTGACAACAGGAAGTTTCATGATTAGAGGGAAGAAGAATTTCTTACCCCCCTCGTATCTTATTATGGGATTTGGTTTTCTCTTCAAAGTggatgagcagtgtgtgtttagacacCGGGGAGAGAGGAAGGTTAAAACTCTGGAGGAAGACGTGGAAGACATGAGCTCTAGTACTGCAGAGCTTttagaggagggagaggagctGTTGgGAGAAGATAGTGCAAATGAAGGAGAGGCTGAGGGAGAAGACATGTCAGAAGAGGATGGCAGAATGGAAGAAGGACAAGATGAAGATGTACTACAAAGAGTGGAAGCAGAAGAGAAAATGGAAGCTAATGAGGAGCAGTCAGCTGAAATCCAACTTGAGACACTGAAGCAGGAGGAGGGGAAGAAGGAGGTGTGTGAACAGAAAGGAGAAAAGGGGATTGATGATGAGACTAAGAGTGAGGAGGAGAGTACTGACATCAGTTTTCCAGACACCACAATCCTGCTCACACACCTTCAGTCTAACAGGGGAATCACCAATGCTGGTTTCAAACAAGAAGTTTCAACACGGgacaacaCAGTGCTACAAGGCAAAAAGTACATGAGTGCAAAGCAGAGAAGGGAtatgaagaagaagcagaaacaGGGAAGCAGTGAACATCCGGAAGAATCTGAGATGAAAAAAGAGGAGAGCCAAAGTTCTTCTGCAACTAATCAGAGTTCTAAGAGTGGAGGAACTGCTCAGCCTCTGAAGAGAGGACAAAAGAACAAGCTGAAGAAAATCAAGGACAAATACAAAGACCAAGATGAGGAGGATCGAGAGCTAATGATGAAGCTACTTGGGTCTGCAGGCTCCaataaagaagagaaagggaagaaaggaaagaagggaAAAGAGGAGCCCGTGAAGCTAGCACCTCAGAAATCTGCTCAAAAGCCAAGAGTTCCAGCGATTGTAGTGAAGAAAGCTGAACAGCCTGGGGCTGAAATCAGTCAAGCAGGACAATACAGCACAGAACAGGATGACAAGGATCCTGATGATTTGGATCAGGAGACTCCTGCAGCAGAGgaatatgAAAATTTTCTTGACTGTCTCACTGGTCAGCCACATCCAGACGATGTGCTTCTGTTTGCAGTGCCTGTGTGTGCACCTTACACAGCTCTCTCCAATTACAAGCACAAAGTGAAACTGACTCCTGGGACacagaagaaaggaaaagCTGCCCGAACTGCTGTGTTCAGCTTCATGCATGCTAAAGAAGCCAGTGCCAGAGAGAAAGACCTGTTTCGCAGCGTTAAGGACACTGACCTATCAAGAAACATGCCTGGCAAAGTCAAAGTATCTGCTCCAAACCTTTTGGCAGCAAAGAAGAAGTAAACTTATGGAATACTGGCTTTGGTTGCAGACAATATGGGGGGTGctccaaaaatgttttcttatatTAGTTATTTGTTTAGCATAAAGTGCTTCTGCTACATATTTATCCAGTCCCACTGATTTTTGAgagatttgtgaaaaaaaatataaagaacacTGTTGACAGCTTTAAAAAGGCATTGTTCAATTTAGTTATTTTTCTGTTCAAGACCAAAATATTTAGAGAAAAATGGCCACATTGTCTACTTGATATACTGGCCACACTGATAAAATGGCCACATTGTCTACTTGATACTTGAAAACTTCTGGCAAAACAGACCACATCAGCAAcagtttttcatgtttctttcatgttttcatataaaaattCTAAGAATTATTAAAGCAAAGTATGTCCTctcaaacacatgcacaaaaagTGACGATGAAATTAAGGCTTATGTACTTTGTAAACTtcttgtgtacagtgtatagcaaGTCCTATTCATCTGCATGATGAAAgcaatgtgtaaaataatactCCTTCCTGACTGGTATTTCTATTGAAAATTGTAGTAATAAATCAAAGAGACTGGACATGCCAAGATGTTCTGCTGTTAGATGAGAGGTGAAATCGTTTGAAGTTAACATGTACAGCCACATTAGATAATCAAAGGAACCAGAGTGAAATCAACCCTCATTAAAACAACATACATTAAGAACATTATTTGAATGACacggaacacatgtacacagttatgtagaatattaaaaatgcaagTGAAGTTTAGCAGgctatatattttacatacaggTTTTTAATGGATGGCAATAATGAATGTTAATTGTATGAGTCCTTATATATCAAATAAATGAGAACATTTTCCTTATACATAATTTGTATCCAATACAAATACAAGTAACTGAGTGGATGACATGTCTAGTATTAGTAATAATGAATTAGCATGCTTCTGATTGCTTGTTTAGTGGAATGAGAgatgatggttaaaaaaaaaaaaaaaaaagcagaagaactGGATGCTCAGGAGTGATATCACAGCATCACTAAACCATGtaaaatcatacattttatttagaatatacAGGGTTTACCGAACAACCACCATACAAGCTTTGATTTTGGACTAGAAGGGGCCTTTAACCTCCAAACAGcatctgtatctctgtctcagCATTCTTCAAACAAGCCTCTTTCGAGTTAAGCACAGGAGCACTGGAGTTGTGCCACAGATTCCCAATATTGCGCTTAGCTTACtgaaatgtgtatgtatgtggttCTAGGATCCTCCAGTATTGGTTGAACCGAATCTCTGTTGGAGGCTGTGTAGGAGATGTTTGGGCAAGCAGTCAAACATGCTCTCAAGCTGATGTCTGTGCTGCATAATAACCTCTGTACAGCACctatgcataaacacacacacacacacacacacaaaaatctctGGCCACTGAGTAATATGACTGCATTATGTAACAGCCTGAACTAAATACTCACCTAAGCAGGGACTTTGGCTGAACTGTGAAAATTAGTAGCTCATTGCTATGGGACTGTtgaggagagaaaaacaaaatttgtCATGGTTGAGAATCCATGTgtgaaatagaaaaaatatgcaaatgagatgtttaaaacagtttttggctttaaagcaataaatattacaaaaacg

Function

GO: NA

KEGG:

id description
K24971 NEMF, RQC2; nuclear export mediator factor NEMF

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201208 lncRNA downstream 82803 22114395 ~ 22114750 (-) True G170020
TU201205 lncRNA downstream 85637 22111579 ~ 22111916 (-) True G170017
TU201196 lncRNA downstream 105250 22091960 ~ 22092303 (-) True G170008
XR_003403079.2 lncRNA downstream 200232 21992957 ~ 21997321 (-) False LOC113529722
TU201320 lncRNA upstream 14614 22255617 ~ 22256725 (-) True G170120
TU201336 lncRNA upstream 49478 22290481 ~ 22326447 (-) True G170129
TU201664 lncRNA upstream 524837 22765840 ~ 22767776 (-) True G170428
TU201701 lncRNA upstream 741978 22982981 ~ 22983368 (-) True G170461
TU201716 lncRNA upstream 742948 22983951 ~ 22984361 (-) True G170476
XM_026919112.2 mRNA downstream 13691 22173266 ~ 22183862 (-) True lrr1
XM_034308090.1 mRNA downstream 50753 22137694 ~ 22146800 (-) True pole2
XM_034308091.1 mRNA downstream 50848 22137694 ~ 22146705 (-) False pole2
XM_026919091.2 mRNA downstream 109166 21781020 ~ 22088387 (-) True mdga2a
XM_026919373.2 mRNA downstream 437252 21742755 ~ 21760301 (-) True mis18bp1
XM_026919100.2 mRNA upstream 20545 22261548 ~ 22274855 (-) True wdr20a
XM_026919099.2 mRNA upstream 20545 22261548 ~ 22274854 (-) False wdr20a
XM_026919087.2 mRNA upstream 44845 22285848 ~ 22348153 (-) True dync1h1
XM_026919088.2 mRNA upstream 44845 22285848 ~ 22348047 (-) False dync1h1
XM_026926714.2 mRNA upstream 341779 22582782 ~ 22737495 (-) True LOC113534106
TU201211 other downstream 81677 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 1380337 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 1464501 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 1631754 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 1866809 20322764 ~ 20330744 (-) True gchfr
TU201673 other upstream 614491 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 2560080 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 3017836 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 3017836 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 3337936 25578939 ~ 25582527 (-) True G171734

Expression Profile