RNA id: XM_034308085.1


Basic Information

Item Value
RNA id XM_034308085.1
length 1362
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC113529717
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22147126 ~ 22171181 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatcgtcaggctgtccatgtggggccatcatCAGCAGCACGGAGTGACTTCCAACTGCTGAGCTCTCcaaacagaagtagggcatcaggatggatcaggcaggtccggagagcagaagggGACCACCGCTGCATACCGAGAACACCCCACAGGACCCGCCGATTTGGAGATCCAAACCGACGCACATTGGTTGTCGTTTTAAGGCGACTAGCTTCGGATGCGCGTTCCCGCGACGGGGGTGCTTTTCACGGCAGGGTCAGTTGCTGATCATGAAGTCTTCCTCCCAAACAATGAGATCTGGTTATATGACCTGGACACCGGTTTAtgGAAAAGGTGTGACATGAATGGGGAAGTTCCTCCATCCATGTCAGGTAGCTGCGGTTGCAATCTAAATGGAACCATGTATATATTTGGTGGGTGCAGTGATGATGGTCAGACCAATGAGCACTATTCTGTCAATCTCCACGATGGTAAATATTCATGGAAGAAGTTAAGTCATTGCTTGGGGTTACGGCCCTCACCCCGAGATAAGCTTTCCTGCTGGGTTCATAAAGGAAGGATTATTTACTTTGGTGGATATGGTCATAAGCTTCTCAGTGAAATCAGCAACCCAGACACTTTCATTGTGGATGAAGCTTCTTGGGCTGAAGACATCTTTTGGGGTTGGAACAGTGAAGTTCATGTGTTTGACCCGGGATCAAAAGGTTGGACAGAACCACAAACACTTGGACATGCCCCTGCCCCGAGGGCTGCCCATGCCAGTGCCACCATAGGTAATAAAGGGTATGTCTGTGGCGGACGAATAATGGAGACAAGAAAATGTGATCTTCATTGTCTGGATTTAAATACATGGATGTGGTCTGAAATTGTTCCAACCAGCACACTTCCTTTGGGCCGCTCATGGCATACGCTAAATGCAGTTTCGGACACAGCACTCTTTCTCTTTGGTGGACTTAGTGTGGATTGCAGACCCATGAGTGATGGTTGGATGTTTGATCTGAAGACAAATGAATGGACAGAAATTAAGCATTCAAACACGGACGAACCACGgctgTGGCACACTGCTTGCTTGGGAGGGGACTCAGATGTTATTGTGTTTGGAGGAAGCCATGATTATATCCTTTTAGTGGACTCTGGTCATTGCAATGACATTCTTGTGTTCCAAACCCAGCCTTACTCACTAATACGGTTATGTGAGGACTTCATTGCAAGCGGTGCAAAAATGTTTCAGACCCAGCTTGCAGGTTTACCACCCAAACTAAGATGCAGTATGCAGAACAGGATAACCTTTTTCAGGTCAACAAGAAAGTCACGGAAAGTCATCAGAACACTGGAGTAATTTCTCTGGAAACACAATATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201200 lncRNA upstream 49874 22097370 ~ 22097571 (+) True G170012
TU201038 lncRNA upstream 54205 22092986 ~ 22093240 (+) True G169853
TU201035 lncRNA upstream 57747 22089474 ~ 22089698 (+) True G169850
XR_004578967.1 lncRNA upstream 303847 21841616 ~ 21843598 (+) True LOC117598284
TU200832 lncRNA upstream 378727 21768164 ~ 21768718 (+) True G169652
XR_004578964.1 lncRNA downstream 109203 22276112 ~ 22279828 (+) True LOC117598281
TU201267 lncRNA downstream 119948 22286857 ~ 22296054 (+) True G170076
TU201266 lncRNA downstream 142596 22309505 ~ 22313365 (+) True G170075
TU201270 lncRNA downstream 147782 22314691 ~ 22348160 (+) True G170078
XR_004578968.1 lncRNA downstream 182147 22349056 ~ 22371200 (+) True LOC117598285
XM_034308104.1 mRNA upstream 381072 21760771 ~ 21766373 (+) True im:7136021
XM_026919377.2 mRNA upstream 381072 21760774 ~ 21766373 (+) False im:7136021
XM_026919469.2 mRNA upstream 548780 21590409 ~ 21598665 (+) True ap4s1
XM_026919097.2 mRNA downstream 325 22167234 ~ 22171181 (+) True LOC113529717
XM_026919111.2 mRNA downstream 16854 22183763 ~ 22198891 (+) False klhdc2
XM_026919110.2 mRNA downstream 17526 22184435 ~ 22198891 (+) True klhdc2
XM_034308093.1 mRNA downstream 17526 22184435 ~ 22198891 (+) False klhdc2
XM_026919109.2 mRNA downstream 17527 22184436 ~ 22198891 (+) False klhdc2
TU200872 other upstream 327386 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 472984 21669907 ~ 21674461 (+) True G169577
XR_004578912.1 other upstream 1616223 20528519 ~ 20531222 (+) False LOC113530103
XR_004578924.1 other downstream 694898 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 694901 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 695118 22862027 ~ 22890770 (+) True LOC113533992
trnah-gug_10 other downstream 1795075 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 1797939 23964848 ~ 23964919 (+) True trnah-gug_11

Expression Profile