RNA id: XM_034308198.1


Basic Information

Item Value
RNA id XM_034308198.1
length 3873
RNA type mRNA
GC content 0.42
exon number 13
gene id rcor1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21193918 ~ 21205161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTACTGTGGAAGTAGTGTGGAAGTGCAGAACTCAAGTTCCCTACTCTCTCCGTATGAACAGCCTCATACTTTATTCAACACAGTTGCGTTTTCTAGCAAAGCGACATTTTCCTCCACACTGGACCTTAAACGCGTGTCCTGAAGGAAAGTAACCTTTTatcgaatgtgtttttgaaatctttcagatgaattttgggcgaaatgagcaattaaattagcattagctgatgctattttgcttagctcgctatcagtgctgtggctgaagcttacagagtgctaacagttagcctactagctaatcCGATAGACTTAATATTGTTCGGGGAACTTAGCTGGCTTGGTATTGCTAACTTCatagagctagctatttataaaggcagCGTTGCAGTCTACAGACTTGGTATTTGATGTTTAACTAtttgtgctcttgtctgagGGGATCTGcgcattttttaaagttgatattcacacttcttgtttttaACAGCGAGGCCGCgaattagccatcatctcagtctccagttagcttagcctgttagctagctagctagtcgtgtgagtgagggatagagagagggggagagagagagacgttgctAAAGTTCGGCGCTGTGCCTCGAGATGCCCGCGATGTTGGAAAAGGGTACGACggagatttcagggaaaagaagaggcagaaactcGGTGAACAACCCAACAAAAAGTTTTACTTCCAACGGCAACAGTAACAATTCTTGGGAGGAAGGAAGTTCTCCTTCCTCCAGTGATGACGAGCACGGTGCAGGAGGGATGCGAGTCGGCCCGCAGTTTCAGGCTGTAGTTCCAGACTACGACCCCGAAGTGGCCAAGGCGagccaggagagagagaatctggGGATGTTGGTGTGGATTCCTAACCAGACTCTGCCAGAGTCTAAATTGGATGAGTATATTGCAATAGCCAAAGAGAAACATGGGTACAACATGGAGCAGGCATTGGGAATGCTTTTCTGGCACAAACACAACATAGAGAAGTCTTTAGCAGACCTGCCCAACTTCACTCCTTTCCCTGACGAATGGACAGTAGAGGACAAAGTGCTGTTTGAACAGGGTTTCAGCTTTCACGGCAAGACTTTCCACCGCATTCAACAAATGCTTCCAGACAAGTCTATTGCAAGCCTTGTTCGATTCTATTATTCCTGGAAGAAAACACGCAGCAAAACCAGTGTCATGGACCGTCATGCACGCAAACAGAAGAGAGATCGTGAGGAGAGCGATGACGAGGCTGATGAGACAACCTGCAACTCTCCAGGTGACACAGAATTTGAATCAaacaaggaggaaaaaaaagagggTCCATCTGGACTTGAAAAACAGGATACAAAACCTGCACTTGTCCAGAAGACAGCGCCTCTCACAGAGAAACCAGCTCACGTTAAAAAGGAAGCACAAGGTCCAAGGAACCACCACCGGGCCAAGAGAAAGCCTCCCAAAGGCATGCACCTGAACCAGAGTGATGTGACTGCCATGTCGAGCAGTGGCCCAGCCGCAGCCAGCGTTCTCAGGCAGCTGGACATGGAGCTCATCGCCATTAAACGACAGATCCAGAGCATCAAACAGAACAACAGCGCCCTGAGAGAAGCGCTTGATACAGGGGTAGAGGAGTTTCGACCTCCTGAGTCTAATTTAAGCGCACTGTTTTCAAAGGTGAATCAGAAATTCAACACACGCTGGACTACAGAGGAGCAGCTTCTTGCGGTACAAGCTATAAGGAAATACGGAAGAGATTTCCAGGCCATTTCTGATGTCATCGGCAACAAGTCTGTGGTGCAGGTGAAGAACTTCTTTGTAAACTACCGTCGTCGCTTCAATTTGGACGAGGTGCTGCAGGAGTGGGAAGCCGAGCACGGCGTGGAAGCCTCCAAGAGCTCGGAGGAAGAGAAAATGGAGGTGTCATCTGAGGAAGGAACCACCACACCTGTACCACCAGAGGACCAGAAGGAGGAACCTATGCCCACAGAAGCACAGACCCCCTCTGCCTCTTGAGTGCCCACATGTGAGAGATCAGATGCTCCTGATCCAAATGCAATCTACAATCCAGTTGAAGGCATGTTGTGCTGAAGAGGCACCGACTCGTACCCACCATTCCCACCAGTCTCCTTGCTGCTGCTCCTTTGACTCAGCTGAAATCTATGATTCTTACATGTCCTACAAAGTGGATTCTCAACTGGCCCAACCCAGGAATAAGGATAGTCTTTACTTTTGTATTGTCACTGCCAACAGGAAATAGTCTCTCTGTCAGGTCAATGTTGTGCCTGGTGCTGCAAGCGCTGTATTCACTGAACCTTCAGAAACACCGAAGACGCTGGATGGATTTTCTGATCTTCTCAACGACAGAGGAAAGCTTGACTTCTGTTGAATAAACATTGTTTCGGTCTCCCTGATAACTTGCTAGTTACTTTAGTGTAGCATCCAACTCTTGCATAAGTTTTGTTCCTTATCAGTTTGTACAGTGATCATATTTAGTATGTTTGATTTTAGATGAGTTGTCATTATTGCTATCATGACTTAAGCTATTCATCTATTTATTTGCTTAATAAGTTGTTTGAAAGGAATTAATAGTTTTTCCAATTATGAAAGAGCCTGTATTGAAGAGATGCATAGCCTTGGTTGTATTCAAAATCCAACCTGTGATTCTGTTAATTGGTAGGACAACCAGCTTTGGTGCTGCAAGTAAAAGAGATTATTAACTGCCTTTAAAGATATGACAGTGAAGTTTGTTAGCAAAgttaggatttttatttattcatccctGTAAGGCATGTTTAACATGTAATTAAGTGATTTTCTTCTAGTGAACCAAACAAATGCAGACGTAGAATGATTTACtgcctctttttctccctcataTTGGCTCTCCCCAGTTCCTCAGTGATGCGCTACAGTGATGAATACAGACATTACTGTGGAACTGATGACGACTTGGTCTTGTTGCAGCTTGAAAGCAAATACAagttcagctttattttaaatccattttaaattctggACAGTTGGATGGATAGAGCCATTTAAATGACCAGAAATTAACTATTGAATTATGGATAAATGGATTAAGCAGGTGTATGTGTTAAAATATTGAACTTCCCATTTAAGATAatcaaatcattgaattcaaaatgcaaaacctttttaattgattttggtatttttaaatatagtggTTCAGTATATCAGGTTCTCACCTAATTAGAATTTAAGTAAGTTGCTTACATAATTCATTAAGAAAGAGGCTTAATAATGGACAATTAATAATTGTTGAGGGTTACATGTGaatattgcaaaataaatatgtCTTTAAAAGCGATTTAACTAGGACTCTTGACTAAATACAGGCTGCCTGTAATAGTACGctggatttttattatatatatattttttaatattatttttggtATATGCTTTTCTCTTGGGTTTTTAATGATGTGTATGAAGGTCTGTCTTGCATGCATGGGCAATTATTTGGTGAACTTGGTCCAAGTTTGAAGGTATGTTCTCCAGTAAAATAGGAGGGGACGTGTGGATGCAATTTGTTTCAATTATCAAAAGCACTACAGAGTAATAGATGCAGGCTACTGAGTTTTGgacaaaaaatgtcaaatctgtcctgaggttattttttttttctccattcatgttcattttctttctgtgcCAGAACCACAAATGGGAGGACTGATttagttttttgtgtgtgtgtgtgtgtgtgtgcgagcgtgcgtgcgtgtgcatacatgcttcagtgtgttttttgacAGTACATTCTTTGCCCACATATAACCGGTTTGTCACTTTAGCAACAGAATAAACCAATGGGATTTAACCAAA

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200384 lncRNA upstream 10198 21181857 ~ 21183778 (+) True G169287
XR_004579003.1 lncRNA upstream 86577 21104943 ~ 21107399 (+) True LOC117598333
TU200101 lncRNA upstream 351802 20832846 ~ 20842174 (+) False G169046
TU200673 lncRNA downstream 334089 21539250 ~ 21539498 (+) True G169543
TU200723 lncRNA downstream 446480 21651641 ~ 21651902 (+) True G169575
TU200820 lncRNA downstream 555632 21760793 ~ 21761231 (+) False im:7136021
TU200832 lncRNA downstream 563003 21768164 ~ 21768718 (+) True G169652
XR_004578967.1 lncRNA downstream 636455 21841616 ~ 21843598 (+) True LOC117598284
XM_026919026.2 mRNA upstream 12417 21144875 ~ 21181559 (+) True tecpr2
XM_026918986.2 mRNA upstream 297565 20845104 ~ 20896411 (+) False eif2ak4
XM_026918987.2 mRNA upstream 297565 20845104 ~ 20896411 (+) False eif2ak4
XM_026918988.2 mRNA upstream 298371 20845104 ~ 20895605 (+) True eif2ak4
XM_034307769.1 mRNA upstream 313311 20845103 ~ 20880665 (+) False eif2ak4
XM_026918799.2 mRNA downstream 3161 21208322 ~ 21223633 (+) True traf3
XM_026918801.2 mRNA downstream 25764 21230925 ~ 21246855 (+) True ehd4
XM_034307941.1 mRNA downstream 45124 21250285 ~ 21289808 (+) True sptbn5
XM_034307942.1 mRNA downstream 45124 21250285 ~ 21282946 (+) False sptbn5
XM_034307943.1 mRNA downstream 84671 21289832 ~ 21296023 (+) True LOC117598249
XR_004578912.1 other upstream 662754 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other upstream 662754 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other upstream 662754 20528527 ~ 20531222 (+) False LOC113530103
XR_004578905.1 other upstream 666025 20521595 ~ 20527951 (+) False LOC113530103
TU200725 other downstream 464746 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 614120 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 1656646 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 1656649 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 1656866 22862027 ~ 22890770 (+) True LOC113533992