RNA id: XM_026919373.2


Basic Information

Item Value
RNA id XM_026919373.2
length 4385
RNA type mRNA
GC content 0.42
exon number 19
gene id mis18bp1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21742755 ~ 21760301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTCGCTCGGTGGGAAAATTCAAAAAAACCGCTCACTGCAACGGCGGTGGTTGGGAGATTCAGGTTTCTGTCGTTCAgcaacattttgttttcttcgGAACTCAACAAACCCTCAGAAGTTGCTTGTTTGGTATTATAACGATACGAAGCGTCTATGTTATGCAGAAAATCGTTTCCTTTAGGAATATAGTCGATGAATCCTGGGACGTGGATCCAGCTCCTTCTTGTCATAGCTCATGTATCTCTCTCCAGCCAAGTGTCTGTCACCTCCTCTGGATCGTGAGCTGTATTACACTCCCGTACAAACCAGCACCATGGCAACTCGTGAGCGGGACACGACTGAAACCCCGGCACGGTCAAACAGAGTAAGCAGAAAATGCACTGCAGTAGTGATGAATTCCACAGTACAGGATCATCAGCTTGGAGCCAAGTCCAGGGCAGCCATGACCTGTGAGCTTAGCACCATTAACAACTCAATGATTCCTCTGAAACGAGTCACTGATACACCAGCAAAAGTCTTTGCCAGACTGAAGGCCAAAGTTCAGCAGCAGAactcagaagagcacagagaagTCAATGTCATTCCCAGACAGCTGGGTAGGGGTGTCTCATTATCCACAAATATGCAGCAGCCACCAGTTGATGATGCGACATCAGAAGGACAGGATACATATGTGCTGACACTTTCACCTCCAGAATCCATGAGCAAAAACTCAGAATTAGAAGATCCCCAAATGACATCACATCTTGATGGAGAAGGAGGCCATAAACCTGACTTGGTTCACAaacCTGTTATTGCACTTGAGAAGATGCTCACTGAAACCTTCACCCAGGTAAAAATGCAGCAAAAGAAAGCTGGGATGAACAGCACCAGCAAGTCTACAGATATAAATCGAGAAGCATATGTTTTGCTGGAACGCATGCCTGATGACTTACCTGCTCAGCCAGGACCTGCAAAGCCAATCCAATTAATGAATCGTGTCAAAAATAGAAGTTATCATGGTGTGTTTGGTGAGATGAGTGTAAGGGACGATTCAGAAGGTGTCGCAGATGACGACAGCAATAGGGTGGATACACTTCAGAGGTTGGATATCACTGCCCAAAGCCAGctagagacacagagaccagAGAAAATGTCTAATAGGCAGTGTGAGCCTTTAGAAGCACCACCTCGGACCCTTCCTAATCTGATGGAGGATTCTCTCCTGCAGCTATCACCCCGCATCTCCATCCCCCGGAAGCAAATGGCAGCAGTTAAGTCCAAACAGCAGACTAAAGAAACAGATAAAGCTCTGGATGTAAGGACAAATGTGAACGAGATTCATTTAAGAGATTGGGTCTTGAAGCTACACAACAAAGAACTTATTGTTGATGGCATTCGCATAGACAACAAGATCCCTTGGCACAGTAGTTGCATCACTGAACGCGTTTCAAGTAACATAGTTAAGACTGCATCTGGTGGGACGTATGTTCTTGTTGGAAAGATGTCACACTACCACAACTCATCCTTTCCTTCATGGTTTATGAAGAAGTTTCTTTTTGGCTTTCCGGAAATGTGGAAGGAGTACCTGAATAAATTCTTGGCTGATAATGAAGGaagTGGAAAAAATCAGAGGAACAATCCAGCACCATGTGAACCACAAATGAAATGGCCCTCCAAAAAACAGATAGCCAAACAACTTAAGTCAAAGGACCTGGTGACCCCTGTTAGCTCTGCAGGCAGTGTGCAGCCTCACAGTGCTCCAGTTTCCCGCAGTGGCCGTCTCATCAAACCTCCTCTGGAGTACTGGAGAGGAGGCAGGATCACTGTAGGGCCCGATATGAATGTTACGGTCCATGAGGATTATACGTCAACCTCCATTTTATTGACGccaaAAACAAGACCAGTGGTGATAAAGTCACCAAAATTGCCTAAAGAACAGCCTGTGTATAAATCTCCTGAAATGCAAAACAGCAGTGATGAGGATACTTTGGCACCAAGgagacgtgttaaacaacataaGTCTTGGAGGACTGAGGGAACCAAAGCAAGGGAAAATGCTTCACAGAAGTCTCAGGATGCAGTTTTCAATTCTGGCTCTGGATCAGAAAAAGCCGCTGCCAAAGAGCCTTCTCCTCAGCAAGCACAGTCTGAGCGAATGTACCTGAGGAGGGGACGGTCATATTCTAGAGAGAGAAACTCGACGGGCTCAGAGACTGAGGCATGCAAGTTTGGTGTGTATTCTGCCTCAGCTGAAGATGACGTTTCTGCAATCCAGGCCCCTGAGAGAAAAACTAAAACACTGCTCAACCGGAAGCATCTGCAGAGAATAATTCAGAGTGAGAAGCACTCCACTCCATGCTCAGACTCTGACACCAGTTCCACACAATCTCAAGTTCAGAAAAGTGCAGATTCAGATCACTTATTTACACCTCCAGATCCTACAAAAGGAGGCAGAAGAAAACCCTTGGAGCAGAAAAGAAAACTAGTTCCTCCGATTGCTGCCATGTGTGAGACTAAGGACATAGTGAATAGTAAAAGGAACATGCGGAGGCAAAAGAAGGTTCCACAGAAATATGAGAATTACGCGATGACTGGTGATGAAAGTTCCCCTTCAGAGCTgatcaaagaagaaaaaagcaagAATTCAAAGTCTACTCGGAAAAGGACGAGACAAAAGGAAAGCTCAGGAGCTTCTGAAAGGACAATGAATGGACATGCCCTCCTGGTTGATAAACATATTGAGCAATCTAAAAAGACAGATAATCCTCAGCCTCCTGTGCCAGATAACACTTGCAAAAACCCAAAGCCATCAGTAAGCTGTAAAACAAGCAGAAAGAACAACAAGGAGCAAACTGCAAAGCACCCTGAGAACAAACAAGATGCGCTAGAAGGAGCATGGACTGATAAAGAGCCAAAACTTCATGAGGCTGTGAACTCATTACCCAAGCACAAGAGTGGTTACTGGGTAAATGTCTCACTGGTAGTTGGCACACGTTCAGCTGAGGAGTGCCAGAATCAGTACACTGCACTTTACCAAACTCATGGACGATCCAAAGGAAAACATAAGGCGAAGACTTCTAAAATAGATGAACCAGCAAAAGAAACTGCTCCAATTACTGCTAAGGTTGGTACGCTCAAGAGGAAGAAACAGATGTGGGACTTTTTGGATCATATGCCAAAAGATGATCATGATGACGTCTTTGCCGGCTCACCAATGCGCAATAAACAAATCAAGTTGCCTGTATGGTCAACAAATGGAGATGAGCCAGATTTTGGCCATCTACAAAATCCACAAACCCCCAGTTCAAGCATGTTTTCTTCAGTGAAAACACCTCAGTGTTTGCACATTACACCAGGGATGCTGCGCTCTGTCAACAGggACAACAATGATAAGTATATTTACCACCTACAGAAGGTAAAAAGGCAAGGCAACCATGGCGGAAAAGTAAGCCCTAAGGACAAGTTCACACCTGTTCCATCAGTAAGGAAAACCAAGAAGAGATGTGTGGCTGAAGATGATAACTTTATTGTTTGGAACATGCTCTCTGACAAGGACGGCCCATCaatgagaggagaagaggaggaggaggatgattaTTTCATGGATGAATACTGAATAATAGGAACATAGTCTACAATTACAAGCCTGTATAGGTTGAATAGGTTTCCATTGCATCATCTGTTTTGCAGTACAGTGTTTTGATGTTACTTTTAAAGGAAGTGTTTTAGGTATGTTCTAATGCACCAAGCAAAAGTTCCCTTTTTCTTAAGTAAATTAGAATAATGCAGCTGTCAACATTCCAGCTTTCAGAATCTgacaattttgtaaatatttatataaagtaatGTGAACCGTTTTACgaccttttttaatttttagaaaTGTGTAATTGGTGAGGGTTTAGCCTAAAGTGACCAGATAGTTCTTTGGATGTGTTTggatttcattttgtttttcatctaTCTATTGGATTTCATctattacatttctgttttaaaaagatGGTGTTTTTGTAATTGTGAATAGATTAAtagttaaaaaatgtaaaatgatgtaAACAAAGTTGTCTTGGCTAAGAATACTCAGTGTGATTTAGATTATCAGAACACATATATGACAGTTTAAGCTGTGCAGGCagtactttttgtattttttttttaaagcaagtcATTGCACAACTAAACGAAATTTGCTTGAAGACTTTGCCAGTCAAATTCCTCTGCACTATGTACAATGTGATAACTATAGCTAAcggttcattaaaaaaaaaagtaaaagaaaaaaaaattgcatcagGTTCTGGCATTTGCTGTGTGAGTTCTACTTCTGTAGTCTACAGTTATGTTCAGTCTCTTCTGACAAATTTCacttgaataaataaagtgttggAATCATTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200781 lncRNA downstream 203210 21539301 ~ 21539545 (-) True G169611
XR_003403081.2 lncRNA downstream 227766 21507393 ~ 21514989 (-) False LOC113529764
TU200770 lncRNA downstream 228394 21506435 ~ 21514361 (-) True LOC113529764
TU200582 lncRNA downstream 369714 21368440 ~ 21373041 (-) True G169454
TU200563 lncRNA downstream 424315 21318226 ~ 21318440 (-) True G169435
TU200827 lncRNA upstream 223 21760524 ~ 21762786 (-) True G169647
TU200828 lncRNA upstream 4657 21764958 ~ 21765221 (-) True G169648
TU200830 lncRNA upstream 5801 21766102 ~ 21767152 (-) True G169650
TU200831 lncRNA upstream 7387 21767688 ~ 21767925 (-) True G169651
TU200833 lncRNA upstream 8068 21768369 ~ 21768742 (-) True G169653
XM_034308310.1 mRNA downstream 5317 21652713 ~ 21737438 (-) False heatr5a
XM_026919463.2 mRNA downstream 5393 21652713 ~ 21737362 (-) False heatr5a
XM_026919464.2 mRNA downstream 5393 21652713 ~ 21737362 (-) False heatr5a
XM_026919462.2 mRNA downstream 5393 21652713 ~ 21737362 (-) True heatr5a
XM_026919465.2 mRNA downstream 26433 21652713 ~ 21716322 (-) False heatr5a
XM_026919091.2 mRNA upstream 20719 21781020 ~ 22088387 (-) True mdga2a
XM_034308090.1 mRNA upstream 377393 22137694 ~ 22146800 (-) True pole2
XM_034308091.1 mRNA upstream 377393 22137694 ~ 22146705 (-) False pole2
XM_026919112.2 mRNA upstream 412965 22173266 ~ 22183862 (-) True lrr1
XM_026919089.2 mRNA upstream 437252 22197553 ~ 22241003 (-) True LOC113529708
TU200304 other downstream 925539 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 1009703 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 1176956 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 1412011 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 1724061 20013579 ~ 20018694 (-) True srp14
TU201211 other upstream 355264 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 1095193 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 3040782 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 3498538 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 3498538 25258839 ~ 25259362 (-) True G171569

Expression Profile