RNA id: XM_026919465.2


Basic Information

Item Value
RNA id XM_026919465.2
length 6045
RNA type mRNA
GC content 0.51
exon number 30
gene id heatr5a
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21652713 ~ 21737438 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGGCCACTGTGAGGCAGACAATAAATGGAGGAAATTCCGCACCACTGATACTCTCCAAAGGAGTGGTTTTCCAGCAAAAATCACTCCAAGGGCACGGTGACCAATATTACTTAAAGTCACAAAGAACCCCAGGCTAACATCTAAGGACCTACAGGTCACTCTTGCATTGAGTAACATCAATGTTCACGAGTCCACCATCAGGCAAACATTGAACAAGGACAGTGTGCATGGCAGCATAGCAACAAGGAAGCCACTACTCTCCAAAAGGAACACTGCTGCACTGATAAGCCAGACGCCTAATGGAAGAATGTtctatggacagatgaatccAACATAGaactttttggtttaaatgaaaaacgttatgtttggcaaaaaccaaaGACTGCATTCCAACATGCGTACCTCATCCCAACCGTGAAGCATTGGGGTGGCAGTATAATTgtttggggctgctttgctgcctTGAGTCCAGGACAGCTTGCCATTATTGATGTACctatgaattctggattgtacCGGGAAATTCTACAGGAGAATGTCAGGGAATCTGTCCGTGAACTGAAGCTTAACTGGGGGGATGTGGAGATGCAAGTAAGAAGCACAGCTATGGCAGCCAGTCAGCACATGCTGGTGTGTGTCCTCCTGGAGCTTGGCAGTGTGTTGCAAGACCTGGGGTCCACCGCTGCACCGCTGCTGCACGACACCAGCATAGGAATGTTGGATACCGTGATCTCTGTGCTCCTTCACCCCAGCTTATCTGCACGCCTGGCAGCTGCCTGGTGCCTGCGCTGCATAGCTGTTGCGCTGCCCGCTCAGCTGGTTGTGTTGCTCGACCGCTGTTCAGAGAGACTTAATGCATTGAAGTGTTGCCCTGAGGCCGTAGCTGGGTATAGTGCTGCAATTGCTGCCCTGCTGGGTGCTGTACAACACTGCCCACTGGGAATACCACATTCTAAAGGCAAGGTGGTGATGGGCCTGGCTGAAGATTTATTGCGCTCTGCTGCCCAGAATAGTAAAATCTCCATCCAGCGAACTCAGGGAGGCTGGCTACTACTCAGTGCACTCAACATCTTGGGACCCGCAGTAGTGAAACATCACCTTCCCAGAATGCTGCTGCTGTGGAAATGTGCCTTTCCTCAGTCTGTTAAGGAGCTGGAGAGTGAACTTAGGCGTGGAGATGCGTTTACATGGCAGGTGGCACTGGAAGGCCGTGCAGGAGCACTGTTTGCAATAAAGAATCTAGTGATTCACTGCAGAGATCACCTCAGCGATGATGTCACTAGTCGACTGCTCCCTCTCCTCTCATGTGCTGTGGCCCTGCTGACTCTGTTGCCTTCTCTAATGAAATCCTACGGGAAACAGAtcaaaaatgcagtgtgtgttttccaaATGAGAGTGTATGAAGTCCTTGCACTGTTGCCCCCTAAAACCTATGAAGAGAGCTTTGGCACTGTGTTGAAACAACTGGTGAATGACCTCACGGATCCGGAGAACACAACATGTGCTGAGGTCAGCCTACTGCGGCCACTGTGCCACGGCTCGGACCTTTCTTTGCTGGGTCCGGCTCTGCATGACATGGACCAGCCCTACATCGAGGAGCAGCTACATGGAGGCAGGATGGGAGGAGGAACATTAGAGTATGACCCTTTCACCATATGTGAGAAATCTCAGGAGGCACCCAAACCCCTTCCCCCAGCTGATGCTctcatcattcattcagtccAGCTGTTTGGAGTAATTTTTCTCCATTTGACAGTCCATCAGAGAGTTCAGATCCTGGAGCagttctgtgagtgtgtgaggcaGCTGAAGGGCACTCGGCAACAGATGGTCCAAATCCACGTAACAGCTGCTTTTTGTAGCAGTCTGAAGtgcTTTGCATTGGGTGATGTAACACTTGGTCCAGAGGAGGTGCAGAAGCCcgcactctctctcttactcgGAGCGCTGGAGAGCTCTAACTCTCTACTGCGATGTGTGGCTGCTGAGGGTTTAGCCCGATTAGCACAGGTTCTCAGTGACCACAATGTAACAGTCACCCTCAGCCTGATGAGCTTTGATAAGCTGAAAGCAGCAAGAGAAGCTGTTTTGCGGACCGGACATGCTCTGTTGCTGGGGGCACTCTATCGCTACCAGGGAGGCATTAGTTCAGCCAAAAACCTCAGTGCTTATGTGGGGGTTCTTTTCACACTCTCACAGGACAGCAGCTCGCCAGAGGTCCAGatgtgCGCTCTCCATTCTTTGGCCATGGTGGTGGACCAGGCTGGACCTCTGTACCATAGTCACATGGAGGCCAGTTTGACTCTAATTTTGCGCCTGCTTctcaccacaccacacactcatGTGGAGGTGCAGCAGAGTCTTGGGCGCTGCCTCATTGCACTCATCACATCACTGGGTCCTGACTTGCAAGgtgagggtgtgggtgtgtgtgcagttaggAGCTCATGTTTGCTGGCCTGTGCTATAATGCAGGACAGTCCAGACTGCCTGGTGCAGGCTCAGGCTATTTCATGCCTCCAACACTTGCACATGTTCTCACCCCGCCACGTCGACCTGGCCAGTCTGGTACCCAGCCTCTGTGGGATCTTGTTGGATTATTCTGTTTTGGTGAACCTGTGCAGCTCATTCCTGTATCTACGCAGGGCGGTGGTAGCGTGTTTGCGTCAGTTAGCCCAGCGAGAGGCAGTGGCGGTGTCTGAGTATGCTGTGGCCCTGGTCAAGGAGCTGCCACGAAGAGACAACACACAGTTGGATGTGACCATTAAGGAGGTGGGTCTGGAGGGAGCTCTGTTTAGTCTGTTGGATCATGAGCGGGATGCCCGACTCTGCCAAGACATTGAAGAAACACTTGTCCACATGATGAGCTCAGCCGCTGAGAGCCAGCTGGCTCACTGGCTCAAGCTCTGCAAGGATGTACTCTCCTCTGCCTGTTCAGACTCAGTAGTTGCTGCGCCTGTGGAGATGAATCAGGAAGAGGATGCAGACAGCTATGATGATGCATCATTCTTTACTGCCAAGTGTGTATACAATGGGCCCTTCAACAACTTGCGCTGGTCCAGCCGTGTATTCgctgttgagtgtgtgtgcaacatCATAGTGCAATGTGAGAGTGGACACCCGGCTCACTTTGACATGACACTGGCTCAAGAACAACGTTTGCACAAGTCcacagATTTCCTGGTTCTACACTTGGGTGATCTGGTGCGCATGGCCTTTATGGCAGCAACAGATCATAGCGAGCAGCTCCGGCTGGCCGGCTTACACATGCTTCTGCTCATCATCCGCAAGTTTGCAGGTGTCCCAGAACCTGAGTTCCCCGGCCATGTCATTCTGGAGCAGTATCAGGCCAATGTGGGAGCTGCTCTAAGACCAGCCTTTTGTGCAGACGTTCCTCCTAATGTCACTGCCAAAGCCTGTCAGGTTTGCAGTGCATGGATGGCCAGCGGGGTTGTCAGTGACCTCCGTGACCTCAGGAGGGTTTATCAGCTATTGGCGTCTTCGCTAATCAAAGTTCAGGCTAGGAGGGATGTGCCTAATCCTCTCTACAACGAGAGCACCTTAACTATGGAGACACTAGCTGTTCTCAAAGCCTGGGCAGAGGTGTATATCATGGCAGTGGAAAGCAGCAGGCACAGAGAGAAGCAGGACCCTTCTGATGATGGTGAAGCTGCAGGGCTGCTAAAACTGGTGCAGGGTGAGCTGGGCACACTGAGCTGCCTGTGGCTGGCAGCACTGCAGGACCACGCGCTGCTCACACTGCCTCCAGACTATGCCAAGCAGCTACCTTCCACAGGTGGCTCATTCTACACAGCCGAAGCACTGGACCAGGCACGTCAGCATTACTGCAGCTCCTGGGCTCCAATCCTCCATGCCACGGCGCTCTGGCTCAACAGCAGTGAGTTTATCATGGCTGATGAGGGGCCGGCCAACCTCTCCAGACCAGTCACCCCCACCACAATGGGCCAGTCCACCACTCGGGACAGCACAAAGTCCCAAGAGGACATCAGTGTGGAGCGTCTTCACCTCATCCTGGGCAtcagtgtggagtttctgtgctcACCTCACTCTCAGAATCAAATGGAAAACATCATCTCATGTCTTCACGCATTGCAAGCTTTACTCGAAGTGCCTTGGCCCCGTTCCAAAGTGGGCAATGATCAGacacTGAGTGTGGAGCTCCTCAGAGTGCTGCATAGGCTGATTGTGACCCGAGAGTCTCCACAGATTCAGCTGGCCGTGTTGGAATTGGTGCGACAGGTGGTgtgtgccactcaggagcatgTTAAAGAGAAACGCCACAGCGCTGAGGTGGATGATGGTGCAGCTGAGAAGGAGACAGTGCCTGAGTTTGGTGAGGGCCGGGACACTGGCGGCCTGGTTCCTGGAAAGTCTTTGGTGTTTGGAGCTCTGCAGCTGTGTCTTTGCACACTACTACGGAAACTTCCACAACTCAGTCCTCGACTGGCAGGCAGTCCCAGAGGACAGGGAGGTATAGTCTCCTCCCTAAGTGACAGCGACTGCACTCTGATCTCCTTGGCTTTAGAGATCCTCTCAGAATTGCCCTCCATCTGCTCTCCTGAGGGCAGCGTATCAGTGTTGCCCACGGTGCTCTATCTGTTGCTTGGGGTGCTGCGGGAGTTGGTGAGGGAATATGGAGGAGTGGGCAAAGAGACACTGGTGCCTGGGACACTTCAAGCACTACGCACGGTCCTGTCATCTCCCATGAGCAGAGTGGAGAAAAGCCGCCGTGCCTGGGTCCAGCTCCTGCGCTGTGCTCTCACTACACTGCTTATGTGCTGGAACACAGACACAACAGAATCTGGTGTGGATGAGATCACTTTGCTGACAGCACTCACCATCTTCCTGCTTTGTGCCAGTGTTGAGGTCACCAATGTAGAGCCGCTAAAGACGTGCTGCATCAGCAAGTTCCAGGCCGGCCTGGAGTCCAAGGACCCCATGGTGTTGAGCCGGTGTTACCAGTTACTGGCATCAGTGTTtcagggcccagcagtggtggCAGAGTCCTTTATCAGGGGACTGGGCACTCAGCTAGTGGCTCGGCTGCAGCAGGTGGAGAAAAACCGCCCTCAGACCACCATCGAGCTGCAGGCCGTGCAGAATGGCGTCAGAGCCATGGAGGCATTAGTGCTCGCTGCTCAGGAAACTCACCGTGCCCAGTTGGTGGCTGTGCTGTTGCCCATCCTAGTCTCCTTCCTGGTGGATGAAAACACTCTGGCTACGGCTCCTGAAGCCTCCTGTTCTCTGCATGAGTCTGCTTTGCAAGACCTGATGCGCCTCGGCCCTCAGTATCCAGCTGTTTTTAAAGCCTCCATGGCCTCGGCACCACACATGAAGGCTCGACTTGAGGCGGCCATCAAGGGCAACCAAGAAATTGTAAGCACCAAGGCCATATCGACTCGGGTGCCCAACATGAGCCAGGTGCCCAGCATCAAACTGAAGACCAACTTTCTGTGAAAACAGGGCATTATTGTGAATTTTAATATTAGTTTAGGGCAAGATTAGAGTTATTTTAACTGATTCATTGTTTTAAGGTACTAGTTGATTGTTGCATTGTTCAAATGTGAGCATTTGTTATAATAAGGCATGAACCTCTATGAGGATTTCGGTTTAAATTGAGGGTTGTgcaaggagagagaggaactaGATTATGGTACATAATGCAGACATTGTTTTAAGGCATAGGACCTGGTTTAATTCCCTTAAGTTGCATTTAAAATTTGAAACAATAAAATTGGAATATTTGAATACCTCCATACATCCAAAAGTTAGTAAAGGAATGTCTGTGTTCTTTTATTAGCACAGTATTTCCTAATGCTAATCCTTATGGAGACAAATAAAGGATGAATACCTGCTTCATTGTTAACTAGCTTGCAACTAAATCCATAACTATTCTGGGTCACTCCAGGAGTGACTAAATACAGGGAGCATTGCAGAATCATGCATTGACATTAACCATACTCTATGTAAATTTGTCTGTaatgttgaaataaaacattttaagtcACTAGAGACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200781 lncRNA downstream 113168 21539301 ~ 21539545 (-) True G169611
XR_003403081.2 lncRNA downstream 137724 21507393 ~ 21514989 (-) False LOC113529764
TU200770 lncRNA downstream 138352 21506435 ~ 21514361 (-) True LOC113529764
TU200582 lncRNA downstream 279672 21368440 ~ 21373041 (-) True G169454
TU200563 lncRNA downstream 334273 21318226 ~ 21318440 (-) True G169435
TU200827 lncRNA upstream 44202 21760524 ~ 21762786 (-) True G169647
TU200828 lncRNA upstream 48636 21764958 ~ 21765221 (-) True G169648
TU200830 lncRNA upstream 49780 21766102 ~ 21767152 (-) True G169650
TU200831 lncRNA upstream 51366 21767688 ~ 21767925 (-) True G169651
TU200833 lncRNA upstream 52047 21768369 ~ 21768742 (-) True G169653
XM_034307833.1 mRNA downstream 3047 21601417 ~ 21649666 (-) False hectd1
XM_034307835.1 mRNA downstream 3049 21598109 ~ 21649664 (-) False hectd1
XM_026919373.2 mRNA upstream 26433 21742755 ~ 21760301 (-) True mis18bp1
XM_026919091.2 mRNA upstream 64698 21781020 ~ 22088387 (-) True mdga2a
XM_034308090.1 mRNA upstream 421372 22137694 ~ 22146800 (-) True pole2
XM_034308091.1 mRNA upstream 421372 22137694 ~ 22146705 (-) False pole2
XM_026919112.2 mRNA upstream 456944 22173266 ~ 22183862 (-) True lrr1
TU200304 other downstream 835497 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 919661 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 1086914 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 1321969 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 1634019 20013579 ~ 20018694 (-) True srp14
TU201211 other upstream 399243 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 1139172 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 3084761 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 3542517 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 3542517 25258839 ~ 25259362 (-) True G171569

Expression Profile