Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026919473.2 |
| length | 1261 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 5 |
| gene id | ap4s1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 21590408 ~ 21598665 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0015031 | protein transport | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0008565 | obsolete protein transporter activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU200673 | lncRNA | upstream | 50910 | 21539250 ~ 21539498 (+) | True | G169543 |
| TU200432 | lncRNA | upstream | 394116 | 21191166 ~ 21196292 (+) | True | G169320 |
| TU200384 | lncRNA | upstream | 406630 | 21181857 ~ 21183778 (+) | True | G169287 |
| XR_004579003.1 | lncRNA | upstream | 483009 | 21104943 ~ 21107399 (+) | True | LOC117598333 |
| TU200109 | lncRNA | upstream | 748234 | 20832846 ~ 20842174 (+) | True | G169046 |
| TU200723 | lncRNA | downstream | 52976 | 21651641 ~ 21651902 (+) | True | G169575 |
| TU200820 | lncRNA | downstream | 162128 | 21760793 ~ 21761231 (+) | False | im:7136021 |
| TU200832 | lncRNA | downstream | 169499 | 21768164 ~ 21768718 (+) | True | G169652 |
| XR_004578967.1 | lncRNA | downstream | 242951 | 21841616 ~ 21843598 (+) | True | LOC117598284 |
| TU201035 | lncRNA | downstream | 490809 | 22089474 ~ 22089698 (+) | True | G169850 |
| XM_026919468.2 | mRNA | upstream | 33977 | 21550393 ~ 21556431 (+) | True | coch |
| XM_034307950.1 | mRNA | upstream | 51272 | 21517523 ~ 21539136 (+) | True | scfd1 |
| XM_034307951.1 | mRNA | upstream | 51458 | 21515071 ~ 21538950 (+) | False | scfd1 |
| XM_026919198.2 | mRNA | upstream | 80325 | 21499733 ~ 21510083 (+) | True | g2e3 |
| XM_026919771.2 | mRNA | upstream | 269994 | 21301911 ~ 21320414 (+) | True | foxg1a |
| XM_034308104.1 | mRNA | downstream | 162106 | 21760771 ~ 21766373 (+) | True | im:7136021 |
| XM_026919377.2 | mRNA | downstream | 162109 | 21760774 ~ 21766373 (+) | False | im:7136021 |
| XM_034308084.1 | mRNA | downstream | 548461 | 22147126 ~ 22166909 (+) | False | LOC113529717 |
| XM_034308085.1 | mRNA | downstream | 548780 | 22147445 ~ 22166909 (+) | False | LOC113529717 |
| XM_034308086.1 | mRNA | downstream | 550036 | 22148701 ~ 22170590 (+) | False | LOC113529717 |
| XR_004578912.1 | other | upstream | 1059186 | 20528519 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578913.1 | other | upstream | 1059186 | 20528525 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578914.1 | other | upstream | 1059186 | 20528527 ~ 20531222 (+) | False | LOC113530103 |
| XR_004578905.1 | other | upstream | 1062457 | 20521595 ~ 20527951 (+) | False | LOC113530103 |
| TU200725 | other | downstream | 71242 | 21669907 ~ 21674461 (+) | True | G169577 |
| TU200872 | other | downstream | 220616 | 21819281 ~ 21820059 (+) | True | G169692 |
| XR_004578924.1 | other | downstream | 1263142 | 22861807 ~ 23022395 (+) | False | LOC113533992 |
| XR_004578925.1 | other | downstream | 1263145 | 22861810 ~ 23022395 (+) | False | LOC113533992 |
| TU201530 | other | downstream | 1263362 | 22862027 ~ 22890770 (+) | True | LOC113533992 |
