RNA id: XM_026919850.2


Basic Information

Item Value
RNA id XM_026919850.2
length 5187
RNA type mRNA
GC content 0.44
exon number 23
gene id LOC113530102
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20444195 ~ 20453800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAGATCTGAACTTCATAAGAAACGACAGTATGAATGAATAGACTACCGAGCCTGCTGGATAGAGTTTTCAGGAAATACTTAAACAGTAACTGTGTACTGAAATAAACTTGTTGGATTTTAGGCTTTCGGAGTTCGAGATTCAGAAACAAAAGGATTTAAGCAACACACTTTTATTCATCGTTTAGGGATATCTGTTCTTCAGTGCAGCCAGCTGTGTTGAGGTCTGAGCATAATGTTGACCACattgtgtttactgctgatgctgtggaGTTCACAAGGCAGCGTAATAACAGAGAGCCGAGAAGACAATAGCGTGTATGACTTACTTGAGCTCTCCAAGGCACAGAAAAAACACCATGGAGTGAGCCTAGTGAAGGGACCCGACCCTTACAGCCCTGCTTACAAAATCCTCAACCCCAACCTGATCCCTGCCATCCCTGAGCGCTTCTTCAGGGATCTCATTTACTCCATCCAGGAGGAAAAAGGCTTCCTATTCGTGGCCAACCTCAAGCAAGCCAAGAAGACCAGGGGCAGCCTGTTCTCCGTGGAGAGGAGAGATGGCTCTGGTTCTGTTTTTGAGCTTGTCTCAAATGGGCCTGCCAATACTTTAGATCTGATTTATGCCACAGCAAGCGGGCACCACGAGATCTCAATCGAAGATGCACAGCTGGCCAGCGGCAGCTGGATGAACATCACCCTGTTTGTGCAGGAGGACCGTGCGCAGCTCTATATTGGTTGTGAAGAGATAAACACAAGCGAACTAGATGTGCCTATCCACCAGATTCTGACACAGGAGGTGGCTGACGTCTCTGTCCTTAGGATTGGAAAAGGAGCAGTGAAAAGCAGATTTATGGGAGTGCTCCAGAATGCACGCTTTGTATTTAGAACCACTTTGGAGACGATCCTTCGTAACATGGGATGTGAGAGCTCCTCCTTCATCATGGATGTCGTGACCCTTGACAACCCAGTGAATGGCTCCAGTCCAGCTATACGCACAGATTATACTGGACACAAGACCAAAGATCTCCAGGATATCTGTGGTTTCTCTTGTGAAGACTTGGCCAGCATGTTTAAGGAGCTCAAGGGGCTTGGTGTGGTTGTTAAGCAACTGTCAAATCAGCTCCACCAAGTGACTACAGAAAACAATCTAATAAAGAACCAAATTAAGAAATACAGTGGGGTGTGCCTGCATAACGGCATCGTCTACAAAGATAAGGATGAGTGGACGGTAGACAGCTGCACCCACTGCACCTGCCAGAACTCTGCCACTATTTGCCGGGAAATCTCCTGCCCTCTCATGCCTTGTGCCAATGCCACTGTGCCTGATGGTGAATGCTGCCCACGTTGTGGAACTCTGAATGACTATGCTGACGATGGCTGGTCTCCCTGGTCCGAGTGGACTCACTGCTCAGTGACCTGTGGCCGTGGCATTCAGCAGCGTGGCCGCTCATGTGATCGCATCAACAACAACTGTGAGGGTACCTCGGTGCAGACCAGAGACTGTTACCTGCAGGAATGTGACAAACGCTTCAAGCAAGATGGAGGCTGGAGCCACTGGTCCCCCTGGTCCTCATGCTCAGTGACCTGCGGTATGGGAGTCATCACTCGCATCCGCCTCTGTAACTCACCCACCCCACAAATGGGAGGCAAAGACTGTCAAGGagaaggcagacagacagaaccaTGCGAGATGTCCCCTTGCCCAATCAATGGAGGCTGGGGGCCATGGTCACTATGGGACTCTTGCTCTGTCACTTGTGGTGGTGGACTGCAGAGTAGACATCGCCTTTGTAACAATCCTGTGCCCAAATATGGTGGAAAAGAGTGCATAGGCGATTCCAAAGGCACCCGTGTGTGCAGCTCTCAAGACTGTCCCGTTGatgGCTGTCTTTCCAACCCTTGCTTTGCTGGTGCTAAGTGCACCAGTTTTCCTGATGGCTCCTGGAAGTGTGGGGAGTGTCCACTTGGTTATACTGGAGATGGTATCAACTGTCAAGACATTGATGAGTGCAAAATGGTTCCTGATGCTTGCTTCACGCTCAATGGAGTCCATCGTTGTGAGAACACAAATCCAGGCTATAACTGCCTACCATGTCCTCCTCGCTACTCTGGAACTCAGCCTTTCGGCAGGAGCAGTGAGCAAGCAATGGCCAACAAACAGGTCTGTGCACCAAGGAACCCATGTGAGGATGGCAGCCATAACTGTAACAAAAAGGCCAATTGTATTTATTTGGGCGTTTTCTCTGACATCATGTTTCGCTGCGAATGCAAGCCAGGCTATGCTGGTAATGGTTATATATGTGGAGAGGACACTGACCTGGATGGCTGGCCCAACACTGATCTCCACTGTGTTGAGAATGCCACCTACCACTGCAAGAAGGACAACTGCCCTGACCTTCCCAACTCTGGGCAAGAGGACTATGACAAAGATGGAATCGGAGATGCttgtgattatgatgatgacaatgatggGATTGCTGATGATAGGGACAACTGCCCATTTGTCTTCAACCCAAGGCAATATGACCAAGACCAAGATGAAGTCGGTGACCGCTGTGATAACTGCCCATATAACAGCAATCCAGACCAGATTGACACAGACAAAAATGGGGAAGGCGATGCTTGTGCAATTGATATCGACGGTGATGGTATTCTGAATGAAAACGACAACTGCCCATACGTGTACAACGTTGACCAGAGAGACACTGACCAAGATGGGGTTGGAGACCACTGTGACAACTGTCCACTGGagcacaaccctgatcagATTGACTCCGATTCAGATAATGTGGGTGACAAATGCGACAGCAATCAGGACATTGACGACGATGGTCACCAGAATAATCTGGACAACTGCCCATACATCCCCAATGCCAACCAGGCTGATCATGACAAGGATGGCAAGGGTGATGCATGTGACcatgatgatgacaatgatggTGTACCTGATGACAAAGACAACTGTAGACTGGCCTTTAATCCAGATCAGTTAGATTCTGACGGTGATGGACGGGGTGATGTTTGCAAGGATGACTTTGACCAAGACAATGTCCCTGATATTCTGGATGTTTGTCCAGAGAACTTTGCCATCAGTGAAACAGATTTCCGTAGGTTCCAGATGGTTCCTCTTGACCCCACAGGAACTTCACAGATTGACCCCAACTGGGTGGTCCGCCATCAGGGTAAAGAGCTTCTTCAGACTGTCAACTGTGACCCTGGCATTGCTGTTGGATATGATGAGTTTAATGCAGTGGATTTTAGTGGAACCTTCTTCATCAATACTGACAGAGATGATGATTATGCTGGCTTTGTGTTCGGCTATCAGTCCAGCTCTCGCTTCTATGTGGTCATGTGGAAACAGATCACGCAGACCTACTGGTCTCAAATACCCACAAAAGCTCAGGGCTACTCTGGACTGTCCATCAAAGTGGTCAATTCCACCACAGGTCCAGGAGAACACCTTAGGAATGCTTTGTGGCATACTGGAGACACAGCAGGACAGGTACGCACTTTGTGGCATGACCCCAAGAAAATTGGCTGGAAGGATTTCACTGCGTACAGATGGCAGCTGATCCATAGACCCAAAACTGGACTTATCAGagtCATCATGTATGAAGGCAAGAAAGTCATGGCAGATTCTGGAAACATATATGACAAGACATATGCTGGTGGAAGACTTGGCCTCTTTGTCTTCTCTCAGGAGATGGTTTACTTCTCAGACCTCAAATATGAATGTAGAgATGTCTAACAGGATGAATTTTTAAGAATGTgtcatcaattttttttgttatcgACCAAGACATCTAAATGTGTGTTATGAGACGAGGCCTAAGGAACTCTGTTATGGTGGGACCAAAGCAACAAAAGGAAACGTTACAAGGTCACGTGACCTTTGAACTAACACCAGCTGGATGACGATCATATACTTGCAGAAAAGCAGGTAAATCATCATCTCTGCATGGAACAGGGAAACAAAACCCTTGAAAACTTCTCCATTTCTAACCTGGTCTCCTGTTAGTGAGGACCAAAAAAAGAAGAGTTATTGTTTCTAATTTAAATGTATAGATCTGCTGTGGACTATGATCCTGAGAGAAAGAAACCTCTCATAATAAGAAGTAAAATCAGCTTACTATGTCCTTTTAGTACACAGAAATGGGCTGTCTGTTACTTCAAGAAAATGAGTGATTTCTGTATGAATGTTTGTCAGAAAGACCCCTCGTGATGATTAAGTGCTAACTGAAAAGCCACTTGCCCTTTTCTGGAGGCATTAAATACATTCTGATGTTCTCAGGGTTAAAGGGACCTTTGTCATCAATGTTTCAAAGCAAAACAGTATGTACCACAAAGTTATTTACAATACTTAAACCATATCTAAATAGGAAATTAATTATTGCCTGTTACCATGTAACAGGCAGATAGACATTTCAGTTGTCACtttgtattaatttatattattgatacccatttttgtgtgtgtgtgtgtgtgtgggtgtgggtgtgtgtgtatatatatatgtatgatagAACATTGAGAACAAACTGGATCTTTGTAGTagaatttcttttattatgtattaaataGTAGTGATTTTTATCCAAAATCCAAACCATTTTGTAGTTTTTAGCCATGCTTGTACTATGCTCTGCATTCTAAACAGCAAAGAAAgacaatatacaaataatacctcatactaaaatataaatcagttACATTTTTACTTAGTTAGCAATGTTGTACAATCATATGttttcaaaatgtatataatacaaaatatttttgccaAATAAAATATCCCTACAGGgcataaatgaattttttatgtTGTGCTTAGTGaatgaatgattcatttttaaataataagttaTTATTGACATTTGATGTATTTGAAGATGTAATTTCATGTTGTAGATATGtgctatttaaataatttatcagGAAGTgtgacatgtttttggaagtGTTCTGTATGTATAAACAGTTTGCACAGTGATGTGAGGatgtttttattgtcttttgttgttgttcttgttgttcttGTTATTAGACCCCCACCTTCCATTGAGGATTGCCTTGTACTATGAGGGTTgccttatatttttatatttaaaatttctcccacagaaatgctgtttttacttgtatgttatttttaaaagaacaaacaataaacagttaaaattaaA

Function

GO: NA

KEGG:

id description
K16857 THBS1; thrombospondin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199937 lncRNA downstream 423 20442997 ~ 20443772 (-) True G168908
TU199899 lncRNA downstream 142641 20298541 ~ 20301554 (-) False LOC113529462
TU199761 lncRNA downstream 292892 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 294293 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 295459 20145267 ~ 20148736 (-) True G168756
TU200177 lncRNA upstream 85062 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 93845 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 110355 20564155 ~ 20564706 (-) True G169118
TU200194 lncRNA upstream 110656 20564456 ~ 20564828 (-) False G169118
TU200211 lncRNA upstream 119607 20573407 ~ 20573613 (-) True G169126
XM_034307745.1 mRNA downstream 72092 20369134 ~ 20372103 (-) True LOC113530110
XM_034308391.1 mRNA downstream 113449 20323514 ~ 20330746 (-) False gchfr
XM_026920020.2 mRNA downstream 113449 20323514 ~ 20330746 (-) False gchfr
XM_026918654.2 mRNA downstream 142646 20298511 ~ 20301549 (-) True LOC113529462
XM_026919034.2 mRNA downstream 188320 20233453 ~ 20255875 (-) False inf2
XM_026919859.2 mRNA upstream 47349 20501149 ~ 20521426 (-) True acp7
XM_034307752.1 mRNA upstream 47349 20501149 ~ 20520386 (-) False acp7
XM_034307751.1 mRNA upstream 47349 20501149 ~ 20518356 (-) False acp7
XM_026919857.2 mRNA upstream 90966 20544766 ~ 20546294 (-) True chrm5a
XM_026919849.2 mRNA upstream 116083 20569883 ~ 20728827 (-) False LOC113530100
TU199915 other downstream 113451 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 425501 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 849418 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1477582 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1596499 18843803 ~ 18847696 (-) False LOC113538624
TU200198 other upstream 111129 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 279130 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 360761 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1661765 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 2401694 22855494 ~ 22863767 (-) True G170435

Expression Profile