RNA id: XM_034307752.1


Basic Information

Item Value
RNA id XM_034307752.1
length 2084
RNA type mRNA
GC content 0.43
exon number 14
gene id acp7
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20501149 ~ 20521426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatcaaacccaaaaatgctgcttgcaaaagtattcaaccccctgCTTCCAGAAGCTTTGAATGAAACATATTGTCTTAATGAGGAAACAGTTGACTAATAATTGGCCTTCACCTGTGAAATATTATAACAGCTcccattttctgaacaaaaaccACCTCAGTTGAACTGACATTGAAGAGACTGTCAGTCTGATGGAAAGGAGTGGAAATGAGGGCTAAGGGGCAATCTAAGGAAGTTAAAAATGAGGAATGAGACAGAAGAAGTagaataaaataagaaagaTGGCTGTTctgcatcttttctttttttgtggtcTTCTGTCTTTGGCCTCATGTGTGCCACCTATCTGGTCCCAGCCTGAGCAGGTGCACATTTCCTATCCAGGTGTGGAGGGTTCAATGGTGATCACTTGGACAACCTTTGACTACACAGAAAGTGTGGTGGAATATGGCCTGTGGGGTGGGAAGCTCTTCAGTCATACTGCTAAGGGAAACTCCACTCTGTTTATTGATGGAGGCTCAGAGAAGCGTCAAATGTACATTCACAGAGTCACATTGCCAGAACTCAGACCTGGGGCTAAATATGTCTACCACTGTGGTAGTGAAGAGGGATGGAGTGATATTCTCTTCTTTACTGCTCTGAATGATAGCACAAGTTTTAGCCCTAGATTTGCTCTGTTTGGTGACATGGGCAATGAAAACCCTCAATCACTGGCCAGACTTCAGAAAGAGACACAGGCCGGGATGTATGATGTCATCCTGCACATTGGAGACTTTGCTTATGATATGCATGAGGACAATGGCAGGATTGGGGATGAGTTTATGAAACAGATTGAGTCCATTGCTGCCTATGTGCCATATATGACCTGTCCTGGTAATCACGAGTGGGCCTACAATTTCTCACACTACAAGAGCCGTTTCAGTATGCCAGGGGAAACTGAGAGCCTGTGGTACAGCTGGAACATTGGGTCAGCACACATCATCTCTTTCTCCACTGAGGTCTACTTCTACCTCGAATATGGCCTAGATCTCCTCTTCAAACAGTATGAGTGGCTGCAGAAAGACCTGGAGGAAGCAAACAAACCAGAGAACAGGGCTGCAAGACCCTGGATAATCACCATGGCACACAGACCCATGTACTGCTCCAATGATGATAAAGATGACTGCACCAAGTTTGAAAGTTATgtACGCCATGGACGCAGTGACACAAAGCCGCCAGCTCCTGGCCTGGAGGACTTATTCTATCAGCATGgagtggatctggagctttgGGCACATGAGCATACCTACGAGAGACTATGGCCTGTGTATAATTACAAGGTGTTTAATGGGAGTGTTGATAAGCCATACGTGAACCCTAAAGCACCTGTGCATATCATTACTGGCTCAGCTGGGTGTCGAGAAAAGCACGATGGGTTTATCCCCAAGCCCCGAGACTGGAGTGCCTTCAGAAGTACTGATTATGGCTACACACGCATGCATCTCATCAACTCAACACACATCTACCTGGAGCAGGTCTCTGATgaccagTCTGGAAAAATTATAGACAGCTTCACACTGATAAAGGAAGTTCATGGGCCCGAGGCCTGGCTCTGAAGACTCCATCAGCTCTGAGAGAGTGAGCACAATCAAACTTTCAGTCAGCAAATTGAACTTTAATACCACATGTGCTGGGTTTTAGCtttggaaaatgaataaatggatacTTAATGAAAATTGGACAATATGCATGAGTGCatgtgaagatgaaaaggagaTGACTATTCCAACTGAAACTCTGTCTTGCCAGATTTACAGTGAGCAATGTTAGATAAATTTACCACAGTGAtgtggttttaaattaaatgcatcaATCATTTGTGCAAGAGACTAAATCTGATATAGATTTTCCTTTGAATGAAGGTACCCCATGATTCTAGTCTTACctcattttgtctattttttaaaatgattatataaagATTAATCCTAAACACATTGttgaaacattttataatcatttattaaatgattCTGATGATCTGGGGAACTATTATGTCTCTGGAACACTTGAAACTCAATAAATCTTCCATTTTTAAGACA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003993 acid phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199937 lncRNA downstream 57377 20442997 ~ 20443772 (-) True G168908
TU199899 lncRNA downstream 199595 20298541 ~ 20301554 (-) False LOC113529462
TU199761 lncRNA downstream 349846 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 351247 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 352413 20145267 ~ 20148736 (-) True G168756
TU200177 lncRNA upstream 18476 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 27259 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 43769 20564155 ~ 20564706 (-) True G169118
TU200194 lncRNA upstream 44070 20564456 ~ 20564828 (-) False G169118
TU200211 lncRNA upstream 53021 20573407 ~ 20573613 (-) True G169126
XM_026919852.2 mRNA downstream 47349 20444195 ~ 20453800 (-) False LOC113530102
XM_026919850.2 mRNA downstream 47349 20444195 ~ 20453800 (-) True LOC113530102
XM_034307745.1 mRNA downstream 129046 20369134 ~ 20372103 (-) True LOC113530110
XM_034308391.1 mRNA downstream 170403 20323514 ~ 20330746 (-) False gchfr
XM_026919857.2 mRNA upstream 24380 20544766 ~ 20546294 (-) True chrm5a
XM_026919849.2 mRNA upstream 49497 20569883 ~ 20728827 (-) False LOC113530100
XM_026919848.2 mRNA upstream 49497 20569883 ~ 20728827 (-) False LOC113530100
XM_026919844.2 mRNA upstream 49497 20569883 ~ 20728827 (-) False LOC113530100
XM_026919835.2 mRNA upstream 49497 20569883 ~ 20728827 (-) False LOC113530100
TU199915 other downstream 170405 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 482455 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 906372 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1534536 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1653453 18843803 ~ 18847696 (-) False LOC113538624
TU200198 other upstream 44543 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 212544 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 294175 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1595179 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 2335108 22855494 ~ 22863767 (-) True G170435

Expression Profile