RNA id: XM_026919862.2


Basic Information

Item Value
RNA id XM_026919862.2
length 1532
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC113530108
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20535056 ~ 20540298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCAAAAGTTTAATTTAGACTTACTTAGTCAGCAAAAAAACTTAAAAGCGCGACACTGACCGAGTCTAAAATGGAATGTTTATGAACGTTTAcaggaatattgtttttttgtcagaatgctttttaaatattgtaactGTGGTTTAAGTGTGGCGGTGGTGTTGTTTGGGTTGTGCGCGCGCTTTAACGCAGTAGCGGAAGGGGAAGAGAAATTCCGCGTTGAGGGCCGCGCGCTCGTGTACGGCGTGAGAACAGAGGAGTGGACTCCGCTCGCGCACGTGCTGCTGGATGGAGAGGAGCATGTCGGCTTCGTCAGGCTTGATGGAAGTTTCACAGTAAATGATGTGCCTTCTGGATCTTATGTACTCCACATTGTGTCACCAGTGTACAGATTCGAGCCTGTCAGAGTTGACATTACTGCAACAGGCAAAATGCGTGCCAGAAGAGTCAATTACATCAAGACATCTGAGGTAATCCAGTTGCCTTACCCTATTCAGATGAGATGTACAGGACAGCATTCATATTTTACAAAACGAGACACATGGGGTTGGTCCGATTTCTTCATGAACCCTGTGGTTCTCATGATGGTGCTTCCCCTTTTGATCATCCTTTTTCTCCCAAAGCTTATCAACATGAATGACCCAGGGATGAGAAGGgaAATGGAACAGTCAATGAATATGCTCAATCCCAGCCCTGAGCTTCCAGATGTGTCCGAGCTCATGACCAAGTTCTTTGCCCCACCTAAAAGCCAAGGTAAATCAGGAACTCACAGGGGACACAGAGGCAGTGGTCCACGCAGGAGATAGCACGTATGTGAGCAAGAAGACATGTTACTCGTGCCTTTGTTTTATCCTGATTTTCCCATTTCAGTCGTTTGCTAAATTAGTATCACCAATTGTGTGCCACAAGCTTTGATACAGTATATGAGAAATATGTGTGATACTATTACCACTGACAGTGCTTTAGTTcagtatgtttttattaattggGTTTTCGAGTACCTTCTCgatacatttctgttttcattgtgctagtatttattcagtgtgtatttatttattgatttagaGAAAacaggtaaaatatatttaagtcaaagttttattaatgttatatattttaaataatgatactattttattagcattaatgATACTATTTTATTAGCATAAAGTGAGGGCAACATTTTCAACTACTAGcttatttcatttattgtaCTTATTTCGTCTGTATGCTATTAAATAACTTTAGAACTCTAGATTAGATATGTGGGTCTCTAAAAAGCAACAGCCTTGGCCGACCACTATGGAAGTTGAATGGGTGAAGACTAAATATATCACTAGTGAAAGTAAGAGGGGCTGTAAGGGACAATATGCCAGAGAAGGCCCAACTGATAGTGGATATCTggtgtctgtgtggagcttgCTTACAAGAACGGATTAGATGAGtgtaacatataaatatacGTGGCCTTTTTTGGGGGCTTTTGAGAGCTTGTaaccactgtaaacactgttaTGTTGACAATAAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199853 lncRNA upstream 81251 20444244 ~ 20453805 (+) False fsip1
TU199855 lncRNA upstream 91123 20443790 ~ 20443933 (+) False fsip1
TU199869 lncRNA upstream 92424 20442375 ~ 20442632 (+) True G168850
XR_004579010.1 lncRNA upstream 186224 20347540 ~ 20348832 (+) True LOC117598343
XR_004578952.1 lncRNA upstream 296417 20237101 ~ 20238639 (+) True LOC117598257
TU199991 lncRNA downstream 29578 20569876 ~ 20572563 (+) True G168938
TU199993 lncRNA downstream 32734 20573032 ~ 20573278 (+) True G168940
TU200100 lncRNA downstream 201046 20741344 ~ 20823383 (+) True G169045
TU200101 lncRNA downstream 292548 20832846 ~ 20842174 (+) False G169046
TU200106 lncRNA downstream 292548 20832846 ~ 20842174 (+) False G169046
XM_034307746.1 mRNA upstream 8202 20521595 ~ 20526854 (+) True LOC113530103
XM_034307749.1 mRNA upstream 90584 20365174 ~ 20444472 (+) True fsip1
XM_034307747.1 mRNA upstream 90584 20400002 ~ 20444472 (+) False fsip1
XM_034307750.1 mRNA upstream 90584 20400002 ~ 20444472 (+) False fsip1
XM_034307748.1 mRNA upstream 90584 20400010 ~ 20444472 (+) False fsip1
XM_026919861.2 mRNA downstream 600 20540898 ~ 20544512 (+) True zgc:194887
XM_034308304.1 mRNA downstream 198621 20738919 ~ 20813729 (+) True LOC113529967
XM_026918989.2 mRNA downstream 303500 20843798 ~ 20896411 (+) False eif2ak4
XM_034307769.1 mRNA downstream 304805 20845103 ~ 20880665 (+) False eif2ak4
XM_026918986.2 mRNA downstream 304806 20845104 ~ 20896411 (+) False eif2ak4
XR_004578908.1 other upstream 3834 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other upstream 3834 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other upstream 3834 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other upstream 3834 20521595 ~ 20531222 (+) False LOC113530103
XR_004578912.1 other upstream 3834 20528519 ~ 20531222 (+) False LOC113530103
TU200725 other downstream 1129609 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 1278983 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 2321509 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 2321512 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 2321729 22862027 ~ 22890770 (+) True LOC113533992

Expression Profile