RNA id: XR_004578916.1


Basic Information

Item Value
RNA id XR_004578916.1
length 2665
RNA type misc_RNA
GC content 0.47
exon number 7
gene id stmn4l
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28900904 ~ 28908552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGAGCAGAAGTGGTGCTGATGCTGCGCAGTCAAACAGCAGCAGAGAGACGggacaaaacacacagacacacacatcacaccgAGGAGCGGAGGTTCAGTGCAGACTCACCCTCAGAGACAGAACAATGACTCTCGcagCCTACAGAGAGAAGATGAAGGAGCTCCCCCTGGTGGCCTACTTCTGCTCTTGCATCCTTCCAGAGCCTAAAGAGAAAACCACCAAAAAAACTCaccaagGCGTGGTGGATCTGAACCTGTGCCTTATCAGGGACATGGAGGTGATCGAGCTGAACAAGCGTTCCTCAGGTCAGGCCTTCGAGGTCATCCTGAGGCCGCCGTCGTTCGACGGTCAGAGAGAGTTTAATCCCACCATCCCGCCCCGCAGAGACCCCTCGCTGGAGGAGATCCAGAAAAAGCTGGACGCTgcggaggagaggaggaagggtcAGGAGGCCGAACTACTGAAACATTTGGCTGAAAAGCGAGAGCACGAGCGTGAAGTGGCTCAGAAAGCCGTGGAGGAACACAACAACTTCATCAAAATGGCCAAAGAGAAGCTGGAGCAGAGGATGGAGATCAACAAGGAGAACAGAGAAGCTCACATCGCTGCCATGCTCGAGCGCCTGCAGGAGAAGGAGAAACACGCTGAGGAGGTGAGGAAAACGAAAGCGCAGATGGAGGTGGACTGGCAGTAGAACGGGAAACGCTGCTCTGTCCGTCTCATTGTCGTGTCGTTTAGATGTCACGTGGGGGGGAAACCCGGAATTGTGTGATTTGGATTTAATTTCCGAGCTTCAGCGTGAGATTTGCGCAAAAGAGTGTTAGAGAAAGAAGAACATTCGTTAGGACTTTGCATGTTTTTAAGCTCACACGCTGCGTCTGCTCTCAATTCGCCTGCTGTCCGTCCTGATTAGTGTCTGAGATTAGGATTATCGTGTCTCTGAAtcagtttaattattttatagagTGCACGTTTCCATGCCAACAGAGCAAATCATTTCCTTCACACGTCTTAAACGTAAAGCAGGAGAGGCTTTCCTCGCCGTGCTCGTGCTCGTGCTCGTGTTCTCGCTCCTGCGTTGAGATTTCACCAGATTTTGGGAATTGCTTTAGGACCCACAATATTCCCTACTCGTGAAGGAAAACAGATCAAATTCAAAAGAAaatctcttgaagttaaacTTATATTCTGTCTGTAGTAAGTCGTGACTTCGTGCTCATCATTATCTGGGAACACTTTCTAGTCACATCATTCTTCTTCCACTGTTTATCACTCAGACACTCGGGCCTTTACAGCTGGTCTCACAAACCTCGACTGCTCTCAAAGAACACGACCAAGAACCAGCTACATGCGCAGAAACAGGAAGTCTGATGGACGTGACATGCGACCAATCACAGAATCTTTTCCTGCAGCGTGTCAGTAAACAAGAGAGATCGGATTCACTGTCTGATGATCGACAAACTAAACAACGCTGCGTCTCAATCCGTCCTGATCAACAGCCGAGATTAGGATCATCGGGTCCCGGATCGTAGGCTGCTGAAACGAGTTTCCCGAAGATTCCTGGATACTCGACTGATTCCTGGAGATTTTCCAAGTAAATCTTACCGACAATATTACCCACGATTCCTTGCgcgagggaggaggaggagtttggTGACGGTTTGCTTCTCCGAATCCGAGGACGTgttttagagaggtgtaaatgaaacgtggaaaataaatcaagggaatgttaaatgaaatgatgaaagaagaaaaaaaatgaaatgatgaagaaaagctgaaacgTGGCGAGGAGGTTGTTTACGGTGACGGCGTGTGTAACCAGGCAACAACGTTCTCTTCTCTTCCGTTACATCGTTACGTGTTAGTGAGAACGTCCCAGTACTCGCATACGACTCTTtactacacactcaaaagtacgCACTTTTCCTTCACTAATACTGTAGTGCGTAGTAGAAGTAGGCGAATTGAGACGCAGCGACGGGGTTGTGATGTGTTTTTGTGATGATGTAAGAACGTAAACTTGTAGTTTGTGTAGTTGCAGTTGGTGTGTATTAGCTTTGTCAgttttattgtgtaaaattaaataacGGCTCGATATCAGAGGAAGTGAATCATGTGAAGCGTGGTTTGTTTTAATGCTTGCATGACCTGATAAAGTGCCTTGAGGTCTTCTGAACATTTTGGGATCCCGCTCACCAAAGGACTGAATGCGATAAAGCCATGAGCTTTATTAgctttttttggggaaaaacaaacaaacaaaaacaagcgaAAATCACAGAAGGTTGTGATGTTGTTACTATGGTTACGATGGCTTTTGTGCGGCCGTTTTTTTGCGAGATGAGAAACAGAGTGACTGGTTTTTCAGCAGAGTCGGAGACAGGAGCAGCGCTAATTTAATACGAGGAGCCAACTGTGCcaaaactgagtgtgtgtgtgtgtgtgtgtgtgaggtgtgtgaggtgtgtgaggtgtgttttTGGACTTTCTTGTGCCTGTTTTGTTAAAGCGAGACCTCGAACCCTCTTGTTTGCTGTGAATATGTTCCAACGCCTCCATGATCAGCTGGTTTCTGATTTGGCTGTTCGATTTTGCTGTACAgaaattgtaatatattttcgATGCGAAGGGCATTAAAGATCTGCTGTGTGCTACg

Function

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG:

id description
K04381 STMN1; stathmin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205166 lncRNA downstream 26586 28873443 ~ 28874318 (-) True G173293
TU205165 lncRNA downstream 28949 28871470 ~ 28871955 (-) True G173292
TU205129 lncRNA downstream 34229 28865913 ~ 28866675 (-) True G173268
TU205162 lncRNA downstream 36737 28862908 ~ 28864167 (-) True G173289
TU205149 lncRNA downstream 38296 28862052 ~ 28862608 (-) True G173282
TU205103 lncRNA upstream 25408 28933960 ~ 28985241 (-) True G173260
TU205104 lncRNA upstream 25408 28933960 ~ 28983936 (-) False G173260
TU205105 lncRNA upstream 25408 28933960 ~ 28984061 (-) False G173260
TU205107 lncRNA upstream 105797 29014349 ~ 29014929 (-) True G173262
TU205226 lncRNA upstream 161483 29070035 ~ 29071425 (-) True G173338
XM_034308308.1 mRNA downstream 15795 28882252 ~ 28885109 (-) True il17a/f2
XM_034308077.1 mRNA downstream 23023 28867671 ~ 28877881 (-) True lrrc57
XM_034308072.1 mRNA downstream 40893 28800742 ~ 28860011 (-) False ralgapa1
XM_034308074.1 mRNA downstream 40894 28798149 ~ 28860010 (-) False ralgapa1
XM_034307776.1 mRNA upstream 7824 28916376 ~ 28928895 (-) True gpn1
XM_034307851.1 mRNA upstream 78807 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA upstream 78807 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA upstream 78807 28987359 ~ 28996155 (-) False khk
XM_034308219.1 mRNA upstream 164152 29072704 ~ 29075467 (-) True mrpl57
TU204662 other downstream 988360 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 990014 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 990014 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 3318377 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 3641542 25258839 ~ 25259362 (-) True G171569
TU205341 other upstream 327367 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 418374 29326926 ~ 29329076 (-) False smyd3

Expression Profile