RNA id: XM_034307755.1


Basic Information

Item Value
RNA id XM_034307755.1
length 2006
RNA type mRNA
GC content 0.45
exon number 8
gene id tedc1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24391053 ~ 24401559 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTgtttgtatagttttttttttttttggatagaCGCTTTGGCGCTTCAGTATCAacgcagagaaaaaaaattaatatcctTTATAAAATGCAGAAGactaatgaacaaaaaaagaatgtaaaagCCAAAGAAGTAATAACAACGCTTTGTAAGCTTCTTTCGGCGCTCGAGGTTGAGTCAGTCCCAGCCGCAGAAGTGTTCAGGAGAGCTAAATTCAACAGGACAGATGCGGTCCAAGACTTGTGGTGTTTGCTCAGTAGTCTCCTTATGAAGGGCTTTGAACCAGACTGCGCATGCTCAGAACTAACCAAACTCTCCACCCCAGACTCCCAGTTACGCTTTGTGAAGAGTGCCCTCTGGCAAAGCGGTTACGGGGGCTGGTGGGTGGTCGGACCCCGGGCCTGTGAAAGCAGAGAGGAGATCGGGAGCAGGGATCTGCTGCTGGCCTTCAGCTGGCTTATTGCATCAGGAAACCTGCTTGAGGCTCTACTACGAGAGAGACTCCTGCAGTTAGATGTCCTCTCATCAGCAGCAGGGGTGAGTCTCTGGAATCTGGGTCCGCCTGAAGAACTGGAGCTGGACCTAAATGGATGTGAAGAAAAAGACATCAAGAGGTTGCAGTGGCAGTATGGGAAACTGAAATTGCAGTGGCGGAGTCTCGTAACagctcagcagcagcaggccaAACTTACTGACAAGATCTGCTCCCACATGAACTCTCCACCCACCTGTTACCCCAGCACTGCCCATGTTCCTAAACTAACTGGATCTACTGCACTTGAAAAGGATCTAGAGCGCATACAGTCCCTGAATGGAATACTTGAAGCATATCTAGAATGGAAAAATGTGGAGCCACTGTTCTGGTGCTGGATGGACAGTGTGATTGATGGCTACCTCTCAGATGGGTATCAAAAAGGGTCTGTGGACGTGCTACTAAGAGACCAGGCTGTCACTCAGAGCTGTTCCCATGGGGACAAGGCTAGGAGATCTGTGAGGCGTCTAGACAAGATGCTGCTCAGGCTACAGACTAAGCACGAGGACAGACTGGACAAATGCACAGACACAACACGACTTAGCCCAAGGCAGAAAGAAGAGGTGGAGAGGAGAGTGGCTGCCCACTTGCAGGGCTTTTCTCTAGTCAGCACTCTGACAGCCATAGACAGAGGCTTTACACCATACTTCCAGGAGCCACAGACCTCCAGGTCAACAAGCAAACAACAGAGAGGTGATTCAGGCCAAGCACAGACTTCAGGAGTGCTCCAGGCTTCATCAATGATAAAGGAGCTGAGGCACAGAAAGGCCATACTAGAGTGGGAGATGGAGCTGCTAAGACAGAGCCAGCGAGAGGAAATGCAGTCAAAGGCTAATACACTGGAGGGACTGGTGTTTATCCTGCCTCTCAAGAGAtgatgcacataaacacacaatgcTGCAGAACACTTCAGAACGCAGGCTGTCTGTAAACTAAAGACTTTCCCAACACTACTCTAGGGGTGTAAAGTTGATTTTTATTAAGAAACTAAATAGCTGTAGAGAATTGTTATGCACTCCCAATTTAAGTGTTCCTGATCAATAATTCCTTTTGATCAATAATGATCATTTGTTGTTTATGCATTTCTGTTGGTTGTCTAAATGCGTTACAGTGAAGCTGttgaaaatattcattcatttcatcaaAAGCCTTCTCAAAGTTTTCCCTTTTTGGCTGAACTTACAGGCTTAGGCACAGTgggagaaaagacagaaataatacACAGAAGCAGACCTATTGCgctgatgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagttcgTATGTGGAagttcatgtgtgtatgtactggTCTGGGAAAATCTGTTGGATGTAACCAAAAATGACAAGAATTTGGGTTttgattaaaatttaaattaccTTTTTTTGCCAATATAATATCTACAAGAAAACATAAATCTGTTTTaccaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202417 lncRNA downstream 106652 24284009 ~ 24284401 (-) True G171056
TU202385 lncRNA downstream 143038 24247685 ~ 24248015 (-) True G171028
TU202284 lncRNA downstream 356155 24034508 ~ 24034898 (-) True G170936
TU202233 lncRNA downstream 392342 23995566 ~ 23998711 (-) True G170887
TU202202 lncRNA downstream 472030 23918425 ~ 23919023 (-) True G170866
TU202554 lncRNA upstream 17373 24418931 ~ 24494790 (-) True G171160
TU202581 lncRNA upstream 66665 24468223 ~ 24469486 (-) True G171175
TU202589 lncRNA upstream 113351 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA upstream 126769 24528327 ~ 24528696 (-) True G171184
TU202651 lncRNA upstream 196717 24598275 ~ 24655253 (-) True G171232
XM_026926645.2 mRNA downstream 10947 24364002 ~ 24380106 (-) True tmem121aa
XM_026926567.2 mRNA downstream 59958 24326943 ~ 24331095 (-) True ccdc28a
XM_026926835.2 mRNA downstream 70556 24306999 ~ 24320497 (-) True LOC113534192
XM_034308286.1 mRNA downstream 99088 24286842 ~ 24291965 (-) True LOC117598332
XM_034308233.1 mRNA downstream 312314 24043617 ~ 24078739 (-) True prox1a
XM_026926577.2 mRNA upstream 2265 24403823 ~ 24408782 (-) True dnal1
XM_026926039.2 mRNA upstream 29837 24431395 ~ 24440254 (-) True samd8
XM_034307735.1 mRNA upstream 29837 24431395 ~ 24438079 (-) False samd8
XM_026926889.2 mRNA upstream 42239 24443797 ~ 24449962 (-) True smndc1
XM_026926874.2 mRNA upstream 52843 24454401 ~ 24462936 (-) True tmem30b
TU201673 other downstream 1527286 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2275177 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3573837 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3658001 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3825254 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 399525 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 857281 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 857281 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1177381 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3497933 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile