RNA id: XM_026925997.2


Basic Information

Item Value
RNA id XM_026925997.2
length 1845
RNA type mRNA
GC content 0.52
exon number 8
gene id prorp
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28742052 ~ 28759394 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACGTCGAGACTCGAGACTCGTCGCGATGCTACTGACGTCACCCAGGTCGCCGCATTGCTAGTGATACATACATGAGGAGTTTAGCTAAAAAGCCAGTTTGCAATGGGATCCTTTATTATAACAAATTCAAGGACTTGTCTCAAGCACCTGTGCCCCCTACTTAGGCGCCCTCTTTATCACCAGCGCGCTCCACAAAAGAATAACCAGCCCAGTAATCACCCCTACTGCACGAAAGGAGAGAGAAGACCATCAGAGTTTCATGGCACCAAGCACAGAGACTTCACTCCGAGAGACAGAACTTCATTCCCAAAGTCAGTGTTTGCAGCCGGCAATGCCAGAAGAACTGCTGAGATTTTAAAGAGGAAATCGGGAGCGGATCAGGACCGGGATCAGGACCCGGACCAGGTCAGTACGGGTTCACTGAAAGGCCGGGCAGCTTTTACAGCTCAGATTCCTGATCGGGCTCTGAGCGTTTCAGAATGGAGAGATCTGAAAAGCAGCTCGTCCAGGCCGGAGCGCTTCGAGCTGAGGATGATGGAGGGAATGCTGGCTGACACTGAGGCTGACATCAGCGTCGCTAAATCTCTCCTCAACTACGTCGCTGCTGAAAACGGAACGCTGCCCTATGAACTGCTGCTCAAGTATCTGGCACTTTGTGTCTCTGGTGGCCATCACTCAGAAGTTTCCGACGTCTACGACATCATGAAGAGCTGCTTTAAGACTCTGGACACCGGAGCGTACAGTCTGTTCGTGAAAGGCCTGAGTCACACCGAGCGCTGGAGAGAAGCCCTGATCATCCTGGAAGACATTAAGAAGgtcatcacaccatcatccaGGAATTATGGTGATGCTGTGACCGGGGCTGTTCTCCATGGCGACAGGGAGACGGCGTGGCGTCTGTATGGTGAGCTGATGGATCAGGGACTGATGCCCAACCAGGAAACATGGCGGTGTTTATTTGAGAGTGGTGTGAGTCAGCGTGCACACAAAGACGAACTCCTGGCCATCTTGACCTACATGAGAGAAAACCAGATTTATCCGGAGGAGAAGTTGGTCAGAAGCATTAAAGCGTGGTTTGAAAGTTTACCAGATGAGAACTGGAGAGGGAAGTTTACTTCTGTGGACCCCGGAGGAGTGTGTCGGAGCTGTGGGACAGAGCTGGAGTCCATCCAGCTGACGGAGGAGGAGTACAATCAGCTAAAACACAGAGTGATGGAGGACGTGATCGAGGGCCGGGACGTCTTCAATAAGACCACGCCTGAGGAGCTGGAGAGTTTTAAGAGCTTTGTGCAGAAAAGACCTGCGTTTGATGTGGTGATCGACGGCCTGAACGTAGCGAACATCACACccaagtgtgtaaaatcagagACGcTGTTGGCGGTGGTCTCAGCACTTCAGGGTCTGAATGTTCTGGTTCTGGgcagaaaacacatgcagcAGCCGTCACGTAACTGGAACAGACACGACATGAACCAGATCAAACAGAAAGCACACTGCTTCTTCACTGAGAACAtCTCGGAGGACGACCCGTTCCTGCTCTacgctgcattgcattctgggaacCACTGTAACTTTGTGAGCCGGGACCTGATGAGGGATCACAAGGCGTGTCTCCCGGACAGCGCCACACGACGCCTCTTCTTCAAGTGGCAGCGAGGACATCAGCTCGTGCTCAGCAACTTCATCCCGGGGAAGAAGATCCGCTTTCAGaggaCGTCACGCTATGATACGATAGTCCAGAGTCATGGAAAGACGTGGCACGTACCCTACGATGAGGACGGAGGAGAGCGGAGCACGTATGAAGTTCCACAGAGGTGGCTGTGTCTCAGTAATGACGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204884 lncRNA upstream 210361 28531459 ~ 28531691 (+) True G173106
XR_004579037.1 lncRNA upstream 306654 28389196 ~ 28435398 (+) True LOC117598375
XR_003403478.2 lncRNA upstream 497326 28236673 ~ 28244726 (+) False LOC113534053
XR_004578977.1 lncRNA upstream 498098 28236673 ~ 28243954 (+) True LOC113534053
TU204603 lncRNA upstream 550140 28148577 ~ 28191912 (+) True G172873
TU204932 lncRNA downstream 10896 28770025 ~ 28772065 (+) True G173140
TU204941 lncRNA downstream 39038 28798167 ~ 28807149 (+) True G173143
TU204959 lncRNA downstream 61371 28820500 ~ 28825365 (+) True G173154
TU204961 lncRNA downstream 73217 28832346 ~ 28864098 (+) True G173156
TU204956 lncRNA downstream 102354 28861483 ~ 28935700 (+) False brms1la
XM_034307928.1 mRNA upstream 6162 28730429 ~ 28735890 (+) True fam177a1
XM_034307929.1 mRNA upstream 6162 28730429 ~ 28735890 (+) False fam177a1
XM_034308125.1 mRNA upstream 25365 28694978 ~ 28716687 (+) True ctage5
XM_034308126.1 mRNA upstream 25365 28694978 ~ 28716687 (+) False ctage5
XM_026926500.2 mRNA upstream 25365 28698644 ~ 28716687 (+) False ctage5
XM_026926002.2 mRNA downstream 736 28759865 ~ 28764015 (+) True psma6a
XM_026926004.2 mRNA downstream 33710 28792839 ~ 28796775 (+) True LOC113533718
XM_034308076.1 mRNA downstream 102333 28861462 ~ 28866650 (+) True brms1la
XM_026926000.2 mRNA downstream 102333 28861462 ~ 28866650 (+) False brms1la
XM_026925999.2 mRNA downstream 102333 28861462 ~ 28866650 (+) False brms1la
trnak-uuu_7 other upstream 1016773 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1276403 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 1276403 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 1276403 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1826622 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 310591 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 334362 29093491 ~ 29138776 (+) False nrde2

Expression Profile