RNA id: XM_026926007.2


Basic Information

Item Value
RNA id XM_026926007.2
length 2514
RNA type mRNA
GC content 0.47
exon number 21
gene id ptpreb
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23740019 ~ 23760260 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTGCGCGCGCTCTACGCTACAGAGTGACGCAGCGGAAGCACCGGCGCGTGCAGCGGACCATAACAGGCgcaaaggaaggaaaaaaaaatatcatcgATTCAGAGCCCTGGATTTTTCTATTACACCGAGGACTTCCGTTGGTGGGGAAAGCCGTAACGAGAGGTCACCACCTATGGCTATCATATCTGTTGTGGCCAGGACGATGTCTTTTATTATCCTGAAGTaaacaagaaagaagaaaagtgatTGAAAAGCTATGAAGCTAGAAGACATTTTGGACTAGTGTCCATAAAGAAGCAAAGTGAGCAGCTGGCTTGGACTACATCTTCATGATGGTCCTGTTTCTGGTGGCAACACATCTTATATTAAACAGCTCCTCACATGCGAACTGGACTGCAGAGCCTCCTGCTCCTCAGGGTTCTCACATCCTACCCGCTGCTCTTGtcatttctctccttctcatcatcttcatcctcctcacAGTCTACCTGCTCAGGTTCAGACACCAAAGGAAGGATCTTGTCACTTCGGTTGACAAAAAGCTACCCAATGGCTTCCTGGAGGACCAAGaacAAACAGTGGTGCTCCTCCCCAGATCTCCCTCTCCGTCCAAGCATTACTTCCCTATCCCACTGGACTCTCTGGAGGAGGAGTACCGCCTGCGCATGGCAGACGATGGCAAGCTGTTCAGAGAGGAATTTAATTCTTTGCCGTGCGGGTTTGGCCGTGGCACGTTTGAGGAAGCTagcagagaggagaacagagaaaagaacagatATCCAAACATACTGCCCTATGATCACTCCAGAGTGTTGCTGTCACATATAGACACCCGTATGTGCTCAGACTACATTAATGCCTCGTACATAGATGGttacaaagaaaagaacaaattcATTGCTACTCAAGgtccGAAACCAGAGACCGTGGCTGATTTCTGGAGAATGGTTTGGGAGCACAAATCTGCCACCATAGTCATGTTGACTAACCTACGGGAGAGAAAAGAGGAAAAATGCTGTCAGTATTGGCCAGAGCAGGGCTGCTGGCTGTATGGATGTGTGAGGGTGTCTGTGGAGGATGTCACGGTGCTGGTGGACTACACTATCAGAAAGTTCTGTGTGCAATATCAAGCTCCAGAAGGCTGCAGATCCCCGAGGTTGGTCACCCAGCTCCACTTCACCAGCTGGCCTGATTTTGGTGTGCCACTCTCCCCTATTGGTATGCTCAAGTTTCTTAAGAAAGTCAGGAGTGTCAATCCAGCGCACGCAGGACCCATAATAGTTCACTGCAGCGCTGGGGTTGGAAGGACCGGGACATTCATTGTGATCGATGCCATGATGAATATGATGCATGCCGAGGGCAGAGTGGACGTCTTCAACTTTGTGTCCCGAATCCGAAACCAGCGCTGCCAGCTTGTACAGACAGACATGCAGTACTCGTTTATTTATCAAGCTTTGCTGGAGCATTACCTGTATGGTGACACTGAGTTGGATGTTTCCTCACTGGAGGGCCACCTGCACAGACTCCACAGTACTCACATACACATGGACAGAGTGGGGCTCGAAGAGGAGTTCAGAaaactgACTAATGTTCGAATTATGAAGGAAAACATGAGAACCGGGAATCTGTCGGCTAACATGAGAAAGAACCGCGTACTGCAGATTATTCCGTATGATTTCAACAGGGTAATATTATCTGTGAAAAGAGGTCAAGAATTCACAGATTACATAAATGCATCTTTTATAGACgGTTACAGGCAAAAGGATTACTTCATAGCTACCCAGGGCCCATTAGCACACACTGTGCAGGACTTCTGGCGCATGGTTTGGGAATGGAAGTGTCACTCTATCGTAATGCTAACTGAGCTAAAGGAGAGAGAACAGGAGAAATGTGTGCGCTACTGGCCTGCGGAGGGCAACATTTCGTTTGGAGAATACAACGTGGAGTTGAAAAGAGACACACTTTACGAGATGTTTAGCCTCCGAGATTTGCTGCTGACGTACACACCGGAGAAGCAGTCTCGTCTGGTCAGACATTTTCACTTCCATGGCTGGCCAGAGATTGGAATCCCATCAGATGGAAAAGGAATGATTGATCTGATTGCTGCAGTgcagaaacaacaacagcaatctGGCAACCACCCCATAGTGGTGCACTGCAGTGCTGGTGCAGGCCGGACTGGAACGTTCATTGCCCTCAGTAACATTCTGGAGCGGGTTAAAGCTGAGGGCTTACTGGACGTGTTCCAGACTGTGAAGAGTTTACGCACCCAGAGACCACACATGGTCCAAACTGTGgaaCAGTATGACTTCTGCTACAAAGTGGTACAGGATTTTGTAGATATCTTCTCCGACTATGCTAAtttcaaataatgaattttcctTTCATGACTTCAGATAAAACATTCAAGTTTGTTCTGCATTCAGTCCGACGAAACTCTTGCTATGGGTTCACAATACTCTATGCACTTGATCTTTctcttaaatgttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18033 PTPRE; receptor-type tyrosine-protein phosphatase epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202118 lncRNA downstream 21250 23718545 ~ 23718769 (-) True G170795
TU202102 lncRNA downstream 35508 23704296 ~ 23704511 (-) True G170782
XR_004578936.1 lncRNA downstream 510863 23201694 ~ 23229156 (-) True LOC117598237
TU201842 lncRNA downstream 589935 23148743 ~ 23150084 (-) False greb1
TU201819 lncRNA downstream 634074 23105235 ~ 23105945 (-) True G170558
TU202129 lncRNA upstream 16295 23776555 ~ 23777311 (-) True G170805
TU202111 lncRNA upstream 17719 23777979 ~ 23779234 (-) True G170788
TU202110 lncRNA upstream 18009 23778269 ~ 23779234 (-) False G170788
TU202188 lncRNA upstream 133864 23894124 ~ 23894355 (-) True G170852
TU202202 lncRNA upstream 158165 23918425 ~ 23919023 (-) True G170866
XM_034308327.1 mRNA downstream 4767 23721794 ~ 23735252 (-) True kctd3
XM_034307870.1 mRNA downstream 474954 23234593 ~ 23265065 (-) False spata17
XM_026926813.2 mRNA downstream 474954 23234999 ~ 23265065 (-) True spata17
XM_026926814.2 mRNA downstream 474954 23235192 ~ 23265065 (-) False spata17
XM_026926020.2 mRNA downstream 560508 23148881 ~ 23179511 (-) True greb1
XM_026926704.2 mRNA upstream 19755 23780015 ~ 23792144 (-) True LOC113534104
XM_026926409.2 mRNA upstream 66788 23827048 ~ 23836772 (-) True soul3
XM_026926410.2 mRNA upstream 69585 23829845 ~ 23836772 (-) False soul3
XM_026926587.2 mRNA upstream 108831 23869091 ~ 23876957 (-) False LOC113534026
XM_034308281.1 mRNA upstream 108831 23869091 ~ 23876957 (-) False LOC113534026
TU201673 other downstream 876252 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 1624143 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 2922803 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3006967 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3174220 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 1040823 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 1498579 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 1498579 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1818679 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 4139231 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile