RNA id: XM_026926036.2


Basic Information

Item Value
RNA id XM_026926036.2
length 3778
RNA type mRNA
GC content 0.53
exon number 26
gene id wdhd1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25336546 ~ 25361861 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTATTCGAAGCTTATTTCATTCATCCCGTTGGAAATTTTCTTCCGGCATCACAGGTGACGCGTTAATGGGTGGAGCCAAACAGCATGTTCTGACCAATAGAAGAGTGAGAAAGGTAGAAATCCACGCCTTCTTTTATACGTCATCATTTCGGCGCGGGAGACAGGAGTTGAAAGCCGTGTTTAAGAGAATTGCCGCCAATAACGAGGAGGACCTACGATGCCCTGTGAGAGGAAGCCGATGCGCTACGGCCACTCAGAGGGCCACACGGACGTCTGCTTTGACGAGCACAGCAAATGCATTGTTACGTGTGGAAGCGACGGAGACGTGCGCATATGGGAAAGTCTAGACGACGACGATCCTAAATCCATAAATGTCGGCGAGAAGGCCTACTCTGTAGCTTTGAGAGGTGGGAAATTAGTCACAGCCGTTTCCAACAACACTGTTCAGATCCACACGTTCCCCGATGGAGATCCCGATGGAATACTCACCCGTTTCACCACCAACGCAAACCACGTCGCCTTCAACTCCAGCGGCACACGAGTCGCTGCTGCCTCCAGTGACTTCCTGATAAAGGTGATTGAGGTGATGGACAGCAGTCAGCAGAAGACTCTACGTGGTCACGATGCACCTGTTCTCagtgtgacctttgaccccagcGATGAGTATGTTGCCTCCTCCAGTTGTGACGGCTCGGTGGCCGTGTGGTCTATAGAGGAGCAGACTCAAGTGGCGAACTGGAAGGTGCTGCAGAAGTCGAGTGACGTGAGCAACGCTAAGTCTCTGTGCAGACTCGCATGGCAAGGATCTGGGAAGctgcttGCAGTTCCAGTGGACACCACAGTACATCTGTATGAGAGAGACTCCTGGACTCATGTTGGCACTCTATCTGATGACCTTCTCACTCAGGTCGTTAACGTGGTGGTTTGGTCGCCGTGTGGGAAGTTTCTGGCAGCCGGAACAGTGGGAGGAACTCTCTCCGTTTGGGACGTTGAAGCGAAGCTGTGCATTGAGAGGCAGAAGCATGAGAAAGGCTACACGGTGTGCGGCATGGCCTGGCATCCCTCCGGAGGACAGATCGCTTACACGGACACCGAGGGCTGCCTGGGCCTGCTGGATGGCGTGTGTGcatcttcctcatcctcctcttcctcatcctcctcttccatTACCACGAAGAACACCACGGCTGCTGAGAGTAAAGAGCAGAACGGTTATGACGATCTGTTTGATGAGGATGACGGCGGCCTGCTAGATGAATGTCGGAGCGTCTCAGCGGGTGAAGAGGACGACGAGGTCCTCATGCCTGCCGCTCGCAAACCGCGCAGCAGAGGGAACGTCCTGGACGATGACGAGAACTCTAGAGACACCGGCTCGGTGAAGGTGGATCATTTAGCTGAGGATGATGGAGAGAGCGGCGTTTTGCCCGCTCCGGCGCCCCCCGTCGCAGCAGCGCCACGCCCGGTTTACGAGGGTCCCATGCCCACTGCGCCTCAGAGAGCCTTCCAACCCGGCTCCACTCCGGCACACCTCATGCACCGTTTCATGgtTTGGAACTCGGTGGGTATTGTGCGCAGCTACAACGATGAACAGGATAACGCCATCGATGTGGAGTTCCACGACACTGCCGTCCATCACGCCATGCACCTCACGAACACACTGGAGCACAGCATGGCCGATCTATCCCAGGAGGCTGTTCTGCTCGCCTGCGAAGGCACCGATGAACTCGCTAGcaagctgcaatgcctGCACTTCTCCACATGGGACACGAATAAGGAGTGGATAGTGGACCTGCCGAAAGGCGAGGACGTGAGGACGCTGTGTTTGGGACAAGGCTGGGCGGCGGCGGCCACCAGTGCCATGCTGGTGCGTCTCTTCTCCATCGGCGGCGTTCAGAGAGAGATTTTCAGCCTCCCGGGCCCTGTAGTGTGCATGGCTGGACACGGGGAGCAGCTTCTTATAGTCTATCACAGAGGGACTGGGTTTGACGGCGACCAGGCTCTCGGGGTGCAGCTTCTGCAGCTCGGCCAAAAAAGGAAGCAGATCATCCACGGTGAACCTCTGCCTCTTTCCCGCAAGTCCCACCTGACATGGATGGGCTTCAGTGCAGAAGGAACACCATGTGCCGTGGACTCGGAGGGCGTGGTGCGCATGCTGAATCGCTCTCTGGGAAACACATGGACTCCTGTGTGTAACACCAGAGACAACTGCAAGAGCAGGTCGGATCATTACTGGGTGGTCGGAATCCACGAGAATCCCCAGCAGCTCAGGTGCATTCCCTGTAAAGGATCCGTTTTTCCCCCGACTCTTCCTCGTCCTGCTGTGGCCATCCTGCCCTTCAAACTGCCCTTCTGCCAGACCAGCACGGAGAAAGGCCAGATGGAGGAGCAGTACTGGCGCTCGGTGCTCTTCCATAATCACTTTGGCTTCCTGTCGTCCAGCGGTTATGAGACGGACGTGGAGACTCAGAGGCAGCAGGAGAAGGAGCAGCAGGAGCTGTTGATGAAGATGTTCGCGCTGTCGTGTAAGCTGGAGCGCGAGTTCCGCTGTGTCGAGTTGGCTGAGATGATGACCCAGAGTGTGGTGACGCTCGCCATCCGCTACGCTTCACGCTCCAGGCGCATGCTTCTTGCTCAGAGGCTCAACGAGCTCGCTCTGGAGAAGGCCAGTCAGCTACAGGAGGAGGCGGAGCCAGAGGAGGAAGCAGCCTATCACAGCCAGGCACAAAATGCAAGATTTAGTCAAGCCAGTCGAGTCGCCAGACACTCGAGCAGCAGAGCGGCACAGGAAGACTGCGATGAAGAAGAGCAGGAAGACGAGGAAGAGCCGATGGAAGCAGAGGAAGAACCGGAAAGCAAAAAGTCACGTGTGAATCCGTTCAGTAAAGGCACAAAATCACCTGAAAAACCTTCCATCAAACCAGTCAGCAAAGAAGGCCGTGTGAACCCCTTTAAGGTCAGTGGATCAGGAAAGCCGTCCACGTCTTCATCACCACAGCCCAGAGCTACTAACGTTCTGGACAACATGACGGCAtccaacaggaaacacacatcGTCCAGTAAAGCTCCAGTGCTAAAGCCTCTGGCACCAAAACCACGCTCCAAGgctcaGGCTACATTGCTGCAGATGAGCACGTCTAAAATAGCTTCTAAGAAGCCGGAGGAGAAGGAGATGGAGAAACCGAGAGCAGAAAAACCTGAGAAACCAGCAGCAGCACCTGGAGACAACGTGGAGAACACCAGACCAAAGACCGGGTTCCAGTTGTGGCTCGAGGAGAACAGGAAGAGCATTCTCGCTGACAAGCCAGACCTGGAGGAGATGGACATCATTAAAGAGGCCATGAGCCGCTTCCGTACGCTGTCAAGcgaggagaggctgAAGTGGACGGAGAAGGCGAAAGGCTCGACTGGAGAGGGTGCAGACCTCAAGAAAAGAAAGCGAGACGAAGAGGGGAATAATGAAGTGGACGAGCAGGTGGATGCGGATGAAAACAGCGCAAAGAAGAAAAAGCCTTTGGACACTTCAGCTAAGCTTTCGGCGTTTGCTTTCAACAAGAATTAATACTCACATTtagtgtttgctttttttttatttttatttttaatacttgcaAGTTCTTATAAATGTCTATTTTCTTGTAAACttcaaaaaaaactaaactaaaacttTACAATAAcccttgctcttttttttttttgtcttattcgtTTGTTTGTACATATTTCTGTGAACTGTTTAACTATATATGAAcctgaagacaaataaaatgttgactttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203079 lncRNA downstream 44608 25291426 ~ 25291938 (-) True G171573
TU203076 lncRNA downstream 47044 25287152 ~ 25289502 (-) True G171570
TU203078 lncRNA downstream 49765 25286042 ~ 25286781 (-) True G171572
TU203041 lncRNA downstream 64784 25267902 ~ 25271762 (-) True G171543
TU203043 lncRNA downstream 70576 25264368 ~ 25265970 (-) True G171545
TU203103 lncRNA upstream 27724 25389583 ~ 25389871 (-) True G171594
TU203256 lncRNA upstream 107645 25469504 ~ 25470074 (-) True G171710
TU203274 lncRNA upstream 142529 25504388 ~ 25509620 (-) True G171726
TU203311 lncRNA upstream 411645 25773504 ~ 25778966 (-) True G171755
TU203430 lncRNA upstream 615937 25977796 ~ 25978027 (-) True G171864
XM_026925989.2 mRNA downstream 1287 25320510 ~ 25335259 (-) False gch1
XM_026925990.2 mRNA downstream 1289 25320510 ~ 25335257 (-) True gch1
XM_026926785.2 mRNA downstream 84243 25240086 ~ 25252303 (-) True ero1a
XM_026926883.2 mRNA downstream 130073 25182416 ~ 25206473 (-) False txndc16
XM_026926884.2 mRNA downstream 130073 25184047 ~ 25206473 (-) True txndc16
XM_026926815.2 mRNA upstream 7646 25369505 ~ 25371805 (-) True socs4
XM_026926797.2 mRNA upstream 28072 25389931 ~ 25396747 (-) True styx
XM_026926794.2 mRNA upstream 36231 25398090 ~ 25418463 (-) True ros1
XM_026926796.2 mRNA upstream 38042 25399901 ~ 25418463 (-) False ros1
XM_034307815.1 mRNA upstream 69464 25431323 ~ 25468569 (-) True zgc:85722
TU203074 other downstream 77184 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 77337 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 529451 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2472779 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3220670 22115565 ~ 22115876 (-) True G170023
TU203284 other upstream 217080 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2537632 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2537632 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2550378 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3475033 28836892 ~ 29050026 (-) True G173287

Expression Profile