RNA id: XM_034307735.1


Basic Information

Item Value
RNA id XM_034307735.1
length 2323
RNA type mRNA
GC content 0.45
exon number 6
gene id samd8
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24431395 ~ 24440254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agactggggtcccatccagtgtgtattccttcTTCTGTTGCATAAatgtcaaacattcatgcaaacTTTGGACAATTTCAGTACAGAAACAACAGCGGACAATAGTATGGTGACGGGTGCTGGGGTTGAGGGCTGGAGCATTAAGGAGGTGGCTCTCTGGCTCAGAGAGCAGGGCTTCAGTGAATACGTGGAGGTGCTTTGCACTAAGCACCGTGTGGACGGAGCCGCATTGTTGTGTCTAACAGAACATGACCTGCGATCCCCACCCCTGCAGCTCCCGAGGCTCGGGGACATCAAGAGGCTCGCACTTGCCCTGCGAGGGCTtcagagacaacacacacacttacacactccacTCAGTGACTTTGGCTCAAAtggtgtgtttctctcacataCCTCAGGATCAAAACGCTGTTTATGGAATGGCAGCATAGACAAAAACCACCCACAGTATAATGGGATCGGCATGGCGGTGTGGGAGGAGCATTGTCACGGTTACACAAATGGGAAATGTAAGAAGGACTACGGCTACCTGGATCCAGAGGGATGGAAGACAGCTCTGAGCTCTGTCTACGTGATGCTTGTGTTTGGCATCACCTCCTTTGTCATGGTGCTGGTGCATGAGAGGGTGCCTGACATGCGAACCTACCCACCCCTGCCTGATATATTCCTCGacagTGTACCTAGAATTCCCTGGGCTTTTGCCATGGCTGAGGCCTGTGCTCTCGTCCTGTGTTACATATTACTGCTAATACTGCTGCTGCACAAACACAGatctaTTCTCTTTCGCAGATTCTGTAGTTTAACAGGGACCGTGTTCCTGCTTCGCTGTGTCACCATGTTCGTCACCTCCCTGTCTGTCCCTGGACATCATCTGCAGTGCTCAGGAAAGATGTACGGTGATATCTGGGCAAAACTCCTGCGCGCATTAGAGATTTGGAGCGGCTTTGGCATGTCCCTGACAGGGGTACACACGTGTGGAGATTACATGTTCAGCGGACACACAGTGGTTCTCACCATGCTCAACTTCTTCGTCACAGAGTACACTCCACGTAACTGGCACATTTTGCACACGCTGGCATGGGTGCTGAACCTGTTTGGGATCTTCTTCATCCTGGCTGCTCATGAGCACTACTCCATTGACGTTTTCATCGCCTTCTACATCACCACTCGGTTGTTCTTGTACTACCACACGCTGGCCAACACGCGGGCGTACCAGCACAGCCGCCGAGCTCGCATCTGGTTTCCCATGTTCTCCTTCTTCGAGTGCAACATCAACGGTCCCATCCCCAACGAGTACTGCTGGCCCTTCTCCAGGCCTGCCTTCATGAAAACACTCATTGGctagaaagaaagtgtgtgtgtcacagttaGACTGTCTTGATTGGTTGGCCGATGGATTTAGATTGTTAAGgagaataatatatttattcagtgGTTCTTCTTTAGGATGAATGGCAGCATTTGGTACTTTGCTGTCAGCTGAAGAGAATCTTTTGTGTTGTGGACTAAAACACTAATCTTGTTCTAGTCAGTACCAACTGGGCACATTCCTATGAAGGAGAACCGAAGTCCAGGGTTCTTTCTTATCTCATTtggtaataaatatttacagtagaaCTGAAGAGCTGGCTAAAGATGTAGCATCGCACATTACagtacactgacactgaaactCACAGTAGTTGGCTAAGATGTGTTCAGCTGCACaatatcagtttttttaatgtatgctttttttttaatgtaaatgatcTAACAAAAGTCTGTTGTTTACAGTGATGGTGTGAGAAGTTTAAACTCCAGCATGGTTTCAGCTTTTGTATTCAAAATCCTGGCTGTGAATTTGAAGGATTGCATTTCTCCATCTTCTCAGAGTAGCAGTGCTACTTTTTACAGATATCCTAAAATCACAGAGGGTAGCTGTACTTATTGTGGCTTTAATATAAAACAGTGGAGTCTCCAcaaccttttttccccagaagTATTACCAAGTACAATGCACATAGTGATGTTGTTACTCAATGAGAAAGCtcagggttttaaaaaaaaaaaaaaaaagacaaaaaaatcaactCCCAGCTCCGTTTGTTTCACTGCACCCTGTTCAAACTGGATGGTGTTTGACTCTTGACTGTTAGAAAGGCTGTTTCTAGTAGTCTGCTCTCTTTCTGTGACATGCAAATGGTTCTATATGTAGTAATAAgttcagttttatatataattttgaatGATCATGTGCAGGACTCATAGGATGAtcatgtgtgagagaaagataagaacaaaaaaaaatgctacattaataaatatttctaacaCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202417 lncRNA downstream 146994 24284009 ~ 24284401 (-) True G171056
TU202385 lncRNA downstream 183380 24247685 ~ 24248015 (-) True G171028
TU202284 lncRNA downstream 396497 24034508 ~ 24034898 (-) True G170936
TU202233 lncRNA downstream 432684 23995566 ~ 23998711 (-) True G170887
TU202202 lncRNA downstream 512372 23918425 ~ 23919023 (-) True G170866
TU202581 lncRNA upstream 30144 24468223 ~ 24469486 (-) True G171175
TU202589 lncRNA upstream 76830 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA upstream 90248 24528327 ~ 24528696 (-) True G171184
TU202651 lncRNA upstream 160196 24598275 ~ 24655253 (-) True G171232
TU202688 lncRNA upstream 328831 24766910 ~ 24801063 (-) True G171258
XM_026926577.2 mRNA downstream 22613 24403823 ~ 24408782 (-) True dnal1
XM_034307756.1 mRNA downstream 29836 24391053 ~ 24401559 (-) False tedc1
XM_026925988.2 mRNA downstream 29837 24391053 ~ 24401558 (-) False tedc1
XM_034307755.1 mRNA downstream 29837 24391053 ~ 24401558 (-) True tedc1
XM_026926645.2 mRNA downstream 51289 24364002 ~ 24380106 (-) True tmem121aa
XM_026926889.2 mRNA upstream 5718 24443797 ~ 24449962 (-) True smndc1
XM_026926874.2 mRNA upstream 16322 24454401 ~ 24462936 (-) True tmem30b
XM_034308381.1 mRNA upstream 52159 24490238 ~ 24544079 (-) False luzp1
XM_034308380.1 mRNA upstream 52159 24490238 ~ 24544079 (-) False luzp1
XM_034308379.1 mRNA upstream 52159 24490238 ~ 24544079 (-) True luzp1
TU201673 other downstream 1567628 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2315519 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3614179 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3698343 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3865596 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 363004 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 820760 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 820760 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1140860 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3461412 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile