RNA id: XM_034307815.1


Basic Information

Item Value
RNA id XM_034307815.1
length 4268
RNA type mRNA
GC content 0.51
exon number 18
gene id zgc:85722
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25431323 ~ 25468569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCGAGGTCGAGTAGAAAGAGACGCTGCGCCTCGCACGAGCAGGAGGTGGTGATGATCTGCGCGCTTCACGCATCACACGCATTCAGCCCGCATCTGCCGCGCGCACAGACCACCGCATGACGCCTCTGGATGCGGCTTAATGCACGCTCTGCGCTGGCACTAGAGGGGGTCAGGATGCCTTTGTGTGCCTTTGGGTGCAGCATCCTTCGCAGAGGAGCTTCTATAATGCTGTGAACGGGGACGTGAAGATGGCGACGGGAGCAGGacggcagcagcagcatcagcagcagcagcagcatcagcagcagcatcctcctcctcctccacctcctccaggAAACCCTGCTGCTCCTGCCTCCTGTGCATCAGGAACCAGTCCGTCCTCAACATCATGCAAGCTGCTTTACGAATCAGGGCTCGCGATGGAGTACTCACACGAGCTGCACCTGAAGATGAGCAAGAAGATAGCCCAGCTCACCAAGGTCATTTATGCACTCAACACCAAAAACGATGAGCACGAAGAGGCCATCCGATCCCTGAAGGATGCTCATGACGACGAGCTCGAGCATGTCCTGAGCGAGACGCGTGAGAAGATCCTGCAGTACCGGAGCAGGATGGGTGCCGAAGCCGAGTTGAAGCGCCGACTCCATGCTCTGGAGGAATCTCTGGAGCTGCACGAGCAGCTGAAACATGAGGCGCTCACTGAGTTCGAGCTGTACCGGCGTCATGTGGAGGAGATGCGCCTCAGCTCGGAGGAGCAGCACTCACAGCGTGTCACTTCCATGCAGCATGAAGCCGAGGAGCTCCGCTGCGACTTCGAGGAGAAGCTGCGCTCCTTCAGCCAGCTGGAAGCCCGAATCGAACAGGAGAAGCAGCGAGCGATGGATGAGCTcaaatccatccatcatcaCGAGCTGCAGGAGCTGATGGAGAACCATCAGCAGAGCCAGAGCGCCTCGACGTGCGTAGATCAGGAGGAGCTGATCGAGCTAGAGGAGCTTATAGAGGAGCTGAAGCAGGAaaaggagaacctggaggaggAGTATGAGGCAAAGCTGGACGATTTGCGTGCATTCTACGAGCGCGAGCTTGAGGCTATGAGGCGCACGCAGCAACTCACAACCGAGAACCTGTTAGCCTGGAAGAGGAGTGAAGTGGAGCTCAGGAAGGATTTTCAGTTGCAGGAGGCCGCGCTGCAAAGGACGCTGTGTAAACTCCGCTCTGACCTGCACCGTGCACAGGAGGAGGCGCGCGAGAGCCGGGACAAGACCAACAGGCTCCAGGCGTCTCTCAATAACGCCGAGGTCACCATTCAGGAGTTACATAAGCAGCTGGAGGAGGCCATACAGGACGGAGAGATTTGGGTGATGCAGCTGAAGGATACAGAGTACGAGTTAGAGGGTAGCAGAGATCGAGTGCAGCAGCAGGCCACGGAAATCCTCCACAAAGCCAGTCAGATCGGCACTCTGCAGGCCACTCAGATGAGTCACGAGGCCACGATTAAGGACctgcagcaggagcagggtCGTCTGAGAGAGAAGATCGTCCAgctggaggaagagaaggacAGACTGCAGAGTCAGAGCCAGGCTTTAGACGAACAGCAGCGCCTGCAGATCCTCAACCTGGAAAAATCCCTGTGTGAGCAGAAGCAAACCTACGAGCTGGATTTGGCTGAGGCTCGGGCTAAATACGAAGAGGAGGCCACTcatgtgaaagaaaatgaagcCAAGGCTCTTGAGGAGGTCATGGAGAAGCACAGACTGCAGCTAGAGAGCGCATACAgcgcagcagagagagagaaaaaccagCTCATTAACGAAATGAAACAGCAGTATGAGATTCGGCGGCTCTCGCTGGAGGAACAGAAGAGCCGCATGCAGCAGCAGCTGGACACTTTCCGCGAGGAGCTCACTGCCAAACTCAACATTGCCAACCAAGAGGTGTCTCATCTGAAGGAGCTGGTGAGGGAGGGTAAGGCAAACCTGGATTCAGCTGAGAATCATATCTCTCGTCTAAAAGAGAACCAGGAGAAGCTGCTCGTCGAGCTGGATGCTGCCAGAGCCAGAGTGCGAGAGACCAGTCACATTCTCACTGATCTACAGGAAGAGATCGAAAGCCAGAAGCAGCAGCATGAGGCCAGGATCATCGCCATCAAAGCTGAGGAGAAGcagaaaatggataaaattaccAAGGAGCTCGATCAGAAGTGGACAGACGCTCTGAGagctgAGCTGAAGACGCTAAGAGAGGAGGTGACAGATGAATACGAGGCTGATAAACAGGCGGCACTCAGCCAGCTATCTCAGCAGAGAGATGTGGAGATCATGGCAGCCAGAGAGAGCTGGCAGAGGAGGGTGGAGGATCTCCTGGAGCAGatCTCCTTACTGAAGCAAAGTCTGGAGCTGCAGCTCTCACAGTCGAACAGCGCTCTGCAGCAGTTACAGTCTCAGTTCACTCAGGAGCGACAGCACTTGGCACAGGAGCTGCATGAGTTAGCGCTGGAGCATCAACAACGAGAGTGCCACCTGCAGGACGCCCACTGCTGCACCATGCAGGAACTGGAGGAGGAGCGCCAGCTTGAGCTTAGGgagctggAGGACCGGCTGAAGCAGGAGCAGCGTGAGGAGCTTCATGCGTTGAGAGAAGCCCACAGACAGACGCTGGAGATCTTGCAGCAACAGTCTGATCAGGAGCTGCAGACTCTGCGCTTCGAGCTCGAAGATGAGGGAAAGGCCATGCTGGcctctCTGCGATCCGAGCTGAATCACCTGCATGCTACAGCTATTGAGCACCTGAGACAGAAACACCTGCAAGAAAAAACAGTGGCCAAAAGAGAGGTGGACAAAACAGTGGAGTGCTGCAAACAGCATGAGCAGGATCTGCTGACTCGGTTCTCAGACCTGCAGCAGGAGGCGAACTGCAGGAAGAACCGTGTCACTGATTTGGACCATGAGATTCATTCTCTGAACGAAACCATTAGCACGTTGACCAAAGAGCTGGAGCTGAAGGGGAAAGAAGTTCTGCGTGTCCGCAGCGAAGCCAATCTGCAGATCAGGGCTCATGAGCAAGATCTGTCTAAGAGGCATGAGAGGGAGATAGGCGAGCTCAACTCAAGCCacaacagagaaacacagatcaTGTTGTCCGATTTTAACAAAGCTCAGGAGCTGCTGAAGGACAAGATCTCCGCTCtgcaaatcctgctggaGGGCACGGAGGAGAAGTTTCGGAACCGTGAGAGCAGACCAGAAGATCTGAAAGCGATCGCTGAGCTCAGAGAGATGGTGGCTGAAAGAGAGTCTCTGGTCAAAAAGTTGGTGGATGATAAGAAGTTCTACCAGCTGGAGTTGGTGAATCGAGATACGAGCTTCAATAAAGTGTTTAACACCAGCCCCAATGTGGGGGTCATTAATCCACTTATAAAGCATAAGAGTAGAAAAGCTGCAATCCGATTCGTCAGCTCTCCAAACCTAAGTGTTGTGGAAGTGGAAGGGAGAGGGGCGGGGCCTACCAGCCTAGAGTCTGTCCCAAGTTCCCCCAATCAGCATGCAGAGCACAAAGCTCCGTCCCTGACCCTGCCCACGCGGAGCCCTCGTGAGAGCGACGATCCGACAGTAGCACCAGAAGAGCCGCAGGAACTCTCATCTCAATACTTCTCGTTCTGACACTTTCCACAAGAAGAGCATGTGAAACAGCACTTTTCAGTCGTCCATTAGTCTGTGTTATGCACTTCACTGTgaatttcacttcctgtttttatttcaataataataataataataataataataataataataataatatacctTTGACTTGGGCATTAATTCAGTATGACAGGTATGTCCAATTTAGTCATATGCACAGATTAGATCATCTCTTCTTGAAGGACCGAAACTGTTGGAATAACACTGTCTTGCCAGTTCTGAAAATTAATTTacaattaattgcacaattaattgtttatatttgtattatattgtctTGTTACGAACAATAAACCATCAATTATAAAATGATGTTTGcatcttcaaattcaaatgtctatataattattgttaatGGGAAATTAGTGTGGAACTgtatttaatgcattaaattatattcataatTATAATATGGCCTGTATTTGTAAACCTTCAGTTAGAgcagtaataatatttttttatttatttatttatttatttatttattttagaaagaagGTTAAGATAGTATACTATtcttgtagctgctataacggaagtgataacaggaacgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203103 lncRNA downstream 41452 25389583 ~ 25389871 (-) True G171594
TU203079 lncRNA downstream 139385 25291426 ~ 25291938 (-) True G171573
TU203076 lncRNA downstream 141821 25287152 ~ 25289502 (-) True G171570
TU203078 lncRNA downstream 144542 25286042 ~ 25286781 (-) True G171572
TU203041 lncRNA downstream 159561 25267902 ~ 25271762 (-) True G171543
TU203256 lncRNA upstream 935 25469504 ~ 25470074 (-) True G171710
TU203274 lncRNA upstream 35819 25504388 ~ 25509620 (-) True G171726
TU203311 lncRNA upstream 304935 25773504 ~ 25778966 (-) True G171755
TU203430 lncRNA upstream 509227 25977796 ~ 25978027 (-) True G171864
TU203440 lncRNA upstream 589676 26058245 ~ 26058509 (-) True G171874
XM_026926794.2 mRNA downstream 12860 25398090 ~ 25418463 (-) True ros1
XM_026926796.2 mRNA downstream 12860 25399901 ~ 25418463 (-) False ros1
XM_026926797.2 mRNA downstream 34576 25389931 ~ 25396747 (-) True styx
XM_026926815.2 mRNA downstream 59518 25369505 ~ 25371805 (-) True socs4
XM_026926034.2 mRNA downstream 69462 25336546 ~ 25361861 (-) True wdhd1
XM_034308044.1 mRNA upstream 52795 25521364 ~ 25533476 (-) True LOC117598272
XM_034308045.1 mRNA upstream 64907 25533476 ~ 25534660 (-) True LOC117598273
XM_034307899.1 mRNA upstream 66163 25534732 ~ 25555563 (-) True LOC113534087
XM_026926010.2 mRNA upstream 88840 25557409 ~ 25574121 (-) True fyna
XM_026926529.2 mRNA upstream 118919 25587488 ~ 25592743 (-) True col10a1a
TU203074 other downstream 171961 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 172114 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 624228 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2567556 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3315447 22115565 ~ 22115876 (-) True G170023
TU203284 other upstream 110370 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2430922 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2430922 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2443668 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3368323 28836892 ~ 29050026 (-) True G173287

Expression Profile