Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034307767.1 |
| length | 1439 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 12 |
| gene id | vrk1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 26405390 ~ 26419207 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0090166 | Golgi disassembly | biological_process |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| id | description |
|---|---|
| K08816 | VRK; vaccinia related kinase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU203215 | lncRNA | upstream | 628947 | 25682394 ~ 25778732 (+) | True | G171684 |
| TU203168 | lncRNA | upstream | 814930 | 25587489 ~ 25592749 (+) | True | G171647 |
| TU203132 | lncRNA | upstream | 884990 | 25518116 ~ 25522689 (+) | True | G171619 |
| TU203104 | lncRNA | upstream | 976757 | 25426891 ~ 25430922 (+) | True | LOC113534148 |
| TU203020 | lncRNA | upstream | 1018174 | 25389366 ~ 25389505 (+) | True | G171523 |
| XR_004579001.1 | lncRNA | downstream | 206733 | 26625940 ~ 26686726 (+) | True | LOC117598331 |
| TU203645 | lncRNA | downstream | 370316 | 26789523 ~ 26789807 (+) | True | G172052 |
| XR_004578997.1 | lncRNA | downstream | 383849 | 26803056 ~ 26839478 (+) | True | LOC117598329 |
| XR_004578998.1 | lncRNA | downstream | 383849 | 26803056 ~ 26839478 (+) | False | LOC117598329 |
| TU203694 | lncRNA | downstream | 447910 | 26867117 ~ 26960238 (+) | True | G172099 |
| XM_026926083.2 | mRNA | upstream | 47588 | 26349862 ~ 26360091 (+) | False | ak7b |
| XM_026926082.2 | mRNA | upstream | 50536 | 26349862 ~ 26357143 (+) | True | ak7b |
| XM_034307841.1 | mRNA | upstream | 52909 | 26349862 ~ 26354770 (+) | False | ak7b |
| XM_034307840.1 | mRNA | upstream | 52941 | 26349862 ~ 26354738 (+) | False | ak7b |
| XM_026926028.2 | mRNA | upstream | 59339 | 26334822 ~ 26348340 (+) | True | LOC113533735 |
| XM_026926532.2 | mRNA | downstream | 484432 | 26903639 ~ 26914229 (+) | True | hhipl1 |
| XM_026926627.2 | mRNA | downstream | 584902 | 27004109 ~ 27006749 (+) | True | slirp |
| XM_026926030.2 | mRNA | downstream | 588727 | 27007934 ~ 27125905 (+) | True | adck1 |
| XM_034307774.1 | mRNA | downstream | 588727 | 27007934 ~ 27125905 (+) | False | adck1 |
| XM_026926031.2 | mRNA | downstream | 588727 | 27007934 ~ 27125905 (+) | False | adck1 |
| TU202966 | other | upstream | 1089418 | 25315560 ~ 25318261 (+) | False | samd4a |
| TU202922 | other | upstream | 1230847 | 25176376 ~ 25176832 (+) | False | LOC117598238 |
| TU202767 | other | upstream | 1399913 | 25003983 ~ 25007766 (+) | True | G171329 |
| TU202761 | other | upstream | 1407630 | 24994493 ~ 25000049 (+) | False | cx28.6 |
| trnar-acg_3 | other | upstream | 1978017 | 24429590 ~ 24429662 (+) | True | trnar-acg_3 |
| trnat-ugu_12 | other | downstream | 496151 | 26915358 ~ 26915430 (+) | True | trnat-ugu_12 |
| XR_003403449.2 | other | downstream | 737136 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403450.2 | other | downstream | 737136 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403451.2 | other | downstream | 737136 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| trnak-uuu_7 | other | downstream | 1306000 | 27725207 ~ 27725279 (+) | True | trnak-uuu_7 |
