RNA id: XM_026926059.2


Basic Information

Item Value
RNA id XM_026926059.2
length 2150
RNA type mRNA
GC content 0.41
exon number 6
gene id fhl5
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25634727 ~ 25640221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGGACGGTATTTATAGAAGGTCTTTTCAATGCATCCTCTTAATCAGTTACTATCCAACCATACGCCTGGacaccacacactccacacagtgCAAGAGCAACTCTGAACACTACCGAAGCAATGTCTACAGACCGATTTGACTGCCATTACTGCAAAGACTCACTGcttggaaaaaaatacatcctAAAAGAAGACACGCAATACTGCACCAAGTGTTATGAGAACCTCTTTGCTAACTGTTGTGAGAGTTGCTCCTTACCAATCGGGTGCAACAACAAGGATCTCTCTTACAAGGATCGCCACTGGCATGAGAACTGTTTCAAGTGCGGAAAATGCAGCCGCTCCTTAGCGGAGAAAGCGTTTGCTGTTAAAGATGACCTTCTCCTCTGCAACGAGTGCTACTCCAACGAGTACTCAGCCAAATGCACTAACTGCAAAAAAACTATCCTGCCAGGCTCGCGGAAAATGGAGCACAAGGGGAACAGCTGGCACGAGACCTGCTTTCTGTGTCAGCGCTGCCAGCAGCCGATAGGAACCAAGTCCTTTATCCCCAAAGATAACAGCTACTTCTGCGTCCCCTGTTTCGAGAAGCAGTTCGCCTATCAGTGCTGCTCCTGCAAGAAAGCTATCACTACTGGTGGGGTGACCTACAACGAAAAGCCGTGGCACCGTGAATGTTTCACTTGCATCGGCTGTAAGAAACAGCTGGCAGGGCAACGCTTCACCTCCCGAGAGAACTACCCCTACTGTCTGGAGTGCTTCAGCAACCTGTACGCTAAGAAATGCGTCGGTTGCACCAAACCCATAACTAGTTTGGCAGGAGCCAAGTATGTCTCGTTTGAGGAGCGTCAGTGGCACAGCGAGTGCTTCACATGCATGCAGTGCTCCGTGTCACTCGTGGGCCGCGGTTTCCTCACACAGCGTGACGACATTCTGTGCACCGACTGCGGACGTGAGAAGTGATGTCGcgaatggcaaaaaaaaaacccagcttttGATCAGTGATGTGTTCTCATATTATTCTTAACACACCTTTGTCTGCATGTCTTCattatttgcataaagttgaatTCCACTGCCATTTTAAGCTTTAGAGAGGGTAATTAATTATTACCGGTGTATCTCCAGATATCTCATGTGGGTCATTTTTATGGACTGTGTGAAGTGACCTACAGAAATATCATGTCCTAATTTATGTTTATGTCTTTTATTCATCAACATTGACAAGTCATTTGGAAAAGATACCAAGGTTTCCAAAAATTAGGATTAGCGGAGAGAGAACGTGTTAGCATTCATACCTTTTCTCACAGTTTCTTTTGTGAAAACCAAGCACAGTAGAAATCACCCTTGCTCAATCTACTTCATAAAAATATGCATATAGTATAATGTGATCAATTCTATTACTTCATCATTTGAAGTGAAGTTCTTTAGAAAGATGTTGGATGAGAGATGAAATCagcatcactgtcatcatcaaaTCAGTGAGCGAAAAGTCCTCTGAGTCTTATACACATCTCTGAGCTCTTTTAAATTTCCTTAAATGGGAAGTAgagctgtttttaaatgtaagcaaagaCAGTAAAATTAATGCATGTTCATATATGGCGAAGCAGAgacagtaaattttttttaatgtttgagtCAGAGTGGTTATAAAGAGTGACTGCCTCAAAGCTGAACTTTGACCCTGAGCCTAAATAATGTCCGCAAatcagttttagttttagttaaaGTTCTAACAGAAATGGCTTAATAGGTTAAAAAACTTTAACGAATAgtgatatttgatattatttGATAGTAAATGGAAACAGAATGTGAAAAATAGTTGACGTGTATGCCATGCACATAGAAATATTCATAGAAGCAGTTTTTTCGCTTGCATTTAGAAGGCACATAGTACTGCTCAGAAGCTTTTGGATATATTTCTACTATTGCATCATACATCACAAGTACAACCACTATGAGTATGTTCTGAAAGATCTgcgcaataaataaaaatgcttactTGAATTGTGTGATTTCTTTGATCACTGTCGGAAACATCATTCTGGAGAAAAAAGATAAGCTATCTAAGAGAGCATGTGTTTACTGTATGTGACATTTAGAGTAATATTTAGCACTCGAAAGCAAATTTATTAATACACT

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203274 lncRNA downstream 125107 25504388 ~ 25509620 (-) True G171726
TU203256 lncRNA downstream 164653 25469504 ~ 25470074 (-) True G171710
TU203103 lncRNA downstream 244856 25389583 ~ 25389871 (-) True G171594
TU203079 lncRNA downstream 342789 25291426 ~ 25291938 (-) True G171573
TU203076 lncRNA downstream 345225 25287152 ~ 25289502 (-) True G171570
TU203311 lncRNA upstream 133283 25773504 ~ 25778966 (-) True G171755
TU203430 lncRNA upstream 337575 25977796 ~ 25978027 (-) True G171864
TU203440 lncRNA upstream 418024 26058245 ~ 26058509 (-) True G171874
TU203600 lncRNA upstream 955060 26595281 ~ 26595483 (-) True G172016
TU203802 lncRNA upstream 1131911 26772132 ~ 26773050 (-) True G172196
XM_026926867.2 mRNA downstream 844 25620016 ~ 25633883 (-) True si:ch211-266g18.9
XM_026926529.2 mRNA downstream 41984 25587488 ~ 25592743 (-) True col10a1a
XM_026926010.2 mRNA downstream 60606 25557409 ~ 25574121 (-) True fyna
XM_034307899.1 mRNA downstream 79164 25534732 ~ 25555563 (-) True LOC113534087
XM_034308045.1 mRNA downstream 100067 25533476 ~ 25534660 (-) True LOC117598273
XM_026926505.2 mRNA upstream 11587 25651808 ~ 25660655 (-) True fut9a
XM_034308356.1 mRNA upstream 24117 25664338 ~ 25669975 (-) True manea
XM_026926682.2 mRNA upstream 39093 25679314 ~ 25680741 (-) True cx52.7
XM_034308237.1 mRNA upstream 672588 26312809 ~ 26321625 (-) True LOC113534079
XM_034308046.1 mRNA upstream 722845 26363066 ~ 26403989 (-) True si:dkey-288a3.2
TU203284 other downstream 52200 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 375365 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 375518 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 827632 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2770960 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 2259270 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2259270 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2272016 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3196671 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 3260683 28900904 ~ 28908552 (-) False stmn4l

Expression Profile