RNA id: XM_026926062.2


Basic Information

Item Value
RNA id XM_026926062.2
length 5100
RNA type mRNA
GC content 0.48
exon number 25
gene id cep295
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24974039 ~ 24991828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTATGGACCAAGTATCCCATTAATTCTAGAGCACCTACAATTCAATGCCaccgaaaaacaaaaaacaaaacaaaaaaacaggggCTTTTGGGGTTCCAGCGAAACATCCAGTCCACCAGGTGGCGGTAAAACTCATTTCTGGCAACTGCCTCAAAtcgaagaagaagaaagccGCTCTGGCTCTGACAGCCGCCATCTTGGAGAAAACACTAGGCGGTCTATTCAAAACGGAAGCGCTGTGGATTAGCTCCTGGCATGGATTATAGCAAATACTACATTCAAACgtaaacttatttaaaaaataaacttatttttaaaaaatgatgtgtttAATCTAATCACTGGTTAGTGATTAGCTATGGCGAATTAAATATGatatgctaactagctagctgtcaACCGGAAGTAAATAAACTATTGTTGATACGTTGGAGGAGGTagccgggttgccagattgctcTCTGTAACTGGTGGAATTGTGTGTCAGATTGTTGAGGAATTCCCTTTTTCTGTGCGTTAGATTAGTTATGTCATGGCTAAATAGGTAAATAGAGGCACAGTAGGATATTAATTTTTGAAATGTTATGTTAAATTTTAGTGTCGATATTGAAGCTTAGTATATGGTTTGAAAATTGAACTAGTTGGGCTAGTTTTAAATGGTTTGGAGTTGAGTTTGTCTTGCgtatctggcaaccctggtagCTACGCAAGTTATTTAACTGTCAAGCCCAGCTTGGAGAGGCGGGGTGTTCAAAAGAAACGTTGGCATGGATTTTAGCAAACACAGTTTTCAGATCTGTCCTGTACGTCATCCCTCATgatatacagtgtgtttacagtcAGAGATGAGCCACGGAGAAATGATTTGCTAAGCTAACAACCCGAGATAAACTAGTGCTACAGCGGATTAGCTAAAGTTCAAGCTAAGCTACTTTGCGAGTTACACAATCGAGTGATTAGAACAAAAGCTGATCAGAATAATACTGCAGTATGAAAGGAAAAAGCACAAAGCTGAGTCGATTGAGTCCTAATGAGGAGGAGCAGCTGATCCGAGAAGAACtgcagagaagaagaaaactgAGATTACAGCAAGTGCGGGAACAAGAGCGCTACATTGCGCTGCAGGTGCGGCGTGAAGTGcaggagaggaaagagagagagctgcagAGTCTCGCCACAGCTCTCCAGGATGAATGGCAAAagcagaaaggagagagaatacAAGCCCTGGAGAAACTGTACGAGGAAAACCTCAGAGATGTGGGTCAGGGCCACCGCAATGCCAAAGAAAAtgagcCGAATCGGGAAGCTCTGGCTCTGAAAAAGGAGCAGAATGTTTCACGAGCAGCAGAGAGGCATCAGAAAGCTCTCCGAAACCTCGTCACCCAAAGACAGGCTGAAGCGGAGCAGCGGAATCGACACGTGGAAGCACGGAAGAAGGCTCTGATGGTGGAGAAGGAGAGGGCAGCAAAAATCGCCAGCCTTCCTCACTCCGGCCCGGACCCCATAGAGagtctTGCGATTCAGGCTCCACTACAACCCAAGATGTCCAACATGGAACATTACTCCATCACACACTACCACATCCCAGAGACAGCAGTGGACAGAGAAACAGATACAGTGCAGCCGGATGCTCAGGAGGCAGCAGCGTTGGAGGCTCGGCGTTTGGAGGAGCTGGAGAAAGAAGAAGCCCGTGATAGGCAGGAGCAACTCGAGAGGGCACGACTTAGAGGAGACCATGCTCTTCGTAAGGAAAAAGGCATACAGAATAACGCGAGGTTGCTGAGCGAGTTGGAGCGACTGCAGCAGGCTGAGCTGCAGCGGCGCAGACACGTGGTGAATAGCATGCCAGCGCAAATCTTCCAGCCGCTCTACAGACATGATGATCTGAGAGCCGAGCAGCAGAGAGACCTGGAAATTGCCTTTCAGGACTTGTGCACTGAAGATAAAGCGATCAGAGATGACTTGGTACTTCAGTTGGTGTCAgagcctcttcctcctcctgttCCGTCTGCTAAAACTGACAGTAGATCTGAATGTGAGCTGGACCTGGACCTGGATGTGACCCTTGAACCCAAGGAGACATCATgtaaggaggaagaggaagacgCAGGAGAGGAGCCTGTTGCTTCTCAAAGCCAGTCTACGGGGTCCTCAGTGCCTGCAGAGGGTACGGGTAGGATGGCTCTGAGGAGGCTGCTGGATCGCATCAGGACTCAGAGGGATCAGTGGAGCAGGAGGGAGCCTGCAGAAAGGCAAGGAAGGGTCAGAGTGGAGAACACCAGCAATGAACATGGATCGCCGAGCAACCTGGAATGGCAGCAAGCTTCTAGTCTGGAAGAAGGCACAGTTGACACATCACTGGCAGAAAATAATTCCAAGGTGAGTGAAGACTCCATTGTGGCTGGACCCATGCTGCAGCCAGACAAGCAGATCTCAGAAATGGACAGGAGAGTGAGGGAAGAGGAGCTGAAGAGGCAGCAAGAGGAGCAGTTTGCCCTGCtacaggagctggaggagaaaCGGCGGAGTCTGGAGCTTCAGCTACAGGAGGCACAGCTGTGTAGGCAGAGGCTACAGGATGCTTTACAAGTGCCTTCTGGGATGTATAGTTTACAGGAAACGCCAACATCACCACAGGAAATGGTTTCTCAGCCTTCACCTGAGGTGAAGGTGTCGGCCCCTCTGTCAGACAGTATGCACATACAGAGACTCCAGCAGTATCAGCAAAGACTCCTGAAGCAGAACCGactTCATAAGAAAACTATTGATGACGCTTGTCGCAGTCTTGAGGAATACAAGCAAACGTTGAAGCTACGTTATGCTCCTGTTAccatggcagcagcacaaacacCATCACCTTCAGTTAATGAGGAAACCATTTGCTCTTTTCCTTCTTTGCCTCACAGGACACTCTCGAATGCCATCACACCTCttttaaacactgacactggatgCCCTGTCTCTCGTGAGACACCAGTGGTGAATGTAAAGCAAAGCCACAACAATATTGTTCTGGCAGACTCAACACTGCTCATTCAGCCTCCTCTACCTAGTCCCAGCCCCGCCCTAACCAAACACCCAGATACCCATGTAATGGCACAGCCTGTCTCTGCACCCATCAGTATCTCTCACTCAGTGCATGAGAATGACTTTTCTTTGATTCCACAACCAGCAGCCAGCACCTTATTAGACAAGAAGCCTTCAGATGGAACGTCAGAGCTTCAAGAAGTTCCTCTACTCCCCCCTGCTGCGTTTCTGGAATATCTGCGAAGCAAGCGTTCTCAGGCACCGCCCACACACCTCACTCCGATCTCTCAGCAGGTCTCAAAAGATCCTGGTGGTGTCCTGCAGGAAGAGGTTGAGAACAGTGCCCCATGTTGGGACTcggaaatggagaaaaatcagCAGGTCAGAGATCGGATACGAAAACAAAGAGATGCCCTACATGCATTACTCAGAGCACAGCACGCAAAGGAGCAGTCAGTCTCACTGGGAATGCATGGCAGTGCTGTTAAGGACGTGAAGGCTTATGAGAAGAGTAATGAACCCCTCCTGGTGTCTACAACACCGAGTCAGAGCCATGCCCACACCCAACAAACTCCTGTGTTTGACTCCAGTGcaaATCGTGTATCTGCAGAACATTCTCTGTGTGAGTCAACAAGTGGTGTACAAGTGAATCCGCCGGTCTCTTGCCCACCACGGATGCTCCAAATCCTCCTGCATGACTTTGAGCAGCACAAACTCAGCACCATTGAGGAAGTGGACACTCCAGTTAATGTTACCATGgatacagctgctGAGGTGTGTATGGAGAGCTCATCAGCAGAGTGCTCAGATTACTCTAACTCCTGCAGTCTCTCTTTGACTCCACCCACCGTGGCCTCAGGGAGCAGTCAGGGGCCAAGCTTAGGCTCAGAGGTCATGAGTTCAGAGGACAGCACACACAGACCCAGCAAACTGTCGTGGAGGGAGACGTTACAGCTCGAATCAGCAACTTCAAGTGCAGGTACAGACTCTACAGAGCAGCAGCAGGTAGAGGAGttggAGCTGATCTTACCACATGATAGAGCCCCTGGTGTGCCAGATTTTCTCTCTTCCACCACCCTCTCAACAGGAAGCTATATCTCTAGTGAACATGATCCCAACTTCAATGTTACAGatACTTCTTTGTTCAGTAATGAATTTTCTGCAAGGCTTGGAGCCTCCCTCACCTCCTCCAGCAGCTTGTGTGGTTTTAGTTTTCCCAAGACAACAGACTCCTCGCATTGCAGTAACAGTCTGCAGCACATCATCGATAAATACACTAAAGAGCTGGACAAATCCCTCAGATCAGTTCATACAGGAGGCAATGTCTCTGTAAGCTTCTGTGCAGAACAGAACAGTGATCCTGGAACACTCACAGCACCCCAACTACCAATGCTCCCTTTACAGTGCAACCTGGAGGACAGCAATTCCCTTAATACCACTATGCAGGATACCTTTCAGTCTCTTTCTCCTGAGATCACAAACAATGAAATGGCAGAATGTTCCACAACTCTCCAACTTCCATTAAATCCACCTGTGGAggactctaacactaacacagacaCAAGTGCATCTGATTGGCTTGATTGTGGCCTTCCACAACACAGCTCCAGTACAGATGCCCAGTCATCATCTGCGTCTGCAGGCTTTCCTCAGTGGGAATGGACTCTGGGGAACAATAGCGAATTAAGGAATCTAGAAGCATCTGTCTCACCTGAAGtaGAAGTGTCCAGGCTGCAGAACGTTGGTGACGTGATGATTAGCACTCTTCCACAAAAAAGCTTTGACGAGACAGAGATGTCCCAATCTACTGATAGATCATGCAGTCAGTTGGAGGAAGTGGAGCACAGGAGGGAGCTACACACCTGCCAGGATGTTTATGCTAAGAACCgagaaaaagcaaaacagtTCAGAATGAAAACCTTGGAGAAACTAAGGGCTAAACAAAGATAATCCTTATTCCAGTCTATTCTGTTTGATAAACATATCTTTGGTGTTTGTTTTCctgacacatttttttgttttgctaactatgtattttaaattatacattaaaaGATTTTACTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202682 lncRNA downstream 47815 24856891 ~ 24926224 (-) False G171256
TU202683 lncRNA downstream 58889 24783017 ~ 24915150 (-) False G171257
TU202679 lncRNA downstream 71999 24827641 ~ 24902040 (-) False G171256
TU202684 lncRNA downstream 83638 24783017 ~ 24890401 (-) False G171257
TU202677 lncRNA downstream 106022 24781282 ~ 24868017 (-) True G171256
TU202841 lncRNA upstream 16271 25008099 ~ 25009389 (-) True G171381
TU203040 lncRNA upstream 269780 25261608 ~ 25262527 (-) True G171542
TU203043 lncRNA upstream 272540 25264368 ~ 25265970 (-) True G171545
TU203041 lncRNA upstream 276074 25267902 ~ 25271762 (-) True G171543
TU203078 lncRNA upstream 294214 25286042 ~ 25286781 (-) True G171572
XM_034308381.1 mRNA downstream 429960 24490238 ~ 24544079 (-) False luzp1
XM_034308380.1 mRNA downstream 429960 24490238 ~ 24544079 (-) False luzp1
XM_034308379.1 mRNA downstream 429960 24490238 ~ 24544079 (-) True luzp1
XM_034308382.1 mRNA downstream 436204 24490238 ~ 24537835 (-) False luzp1
XM_026926874.2 mRNA downstream 511103 24454401 ~ 24462936 (-) True tmem30b
XM_026926447.2 mRNA upstream 17955 25009783 ~ 25046786 (-) True si:ch211-266o15.1
XM_034307977.1 mRNA upstream 64536 25056364 ~ 25106759 (-) False nid2a
XM_034307978.1 mRNA upstream 64536 25056364 ~ 25106759 (-) False nid2a
XM_034307972.1 mRNA upstream 64536 25056364 ~ 25106759 (-) False nid2a
XM_034307983.1 mRNA upstream 64536 25056364 ~ 25106759 (-) False nid2a
TU202681 other downstream 166944 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2110272 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2858163 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 4156823 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 4240987 20732930 ~ 20733052 (-) True LOC113530231
TU203072 other upstream 267011 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 267011 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 587111 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2907663 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2907663 27899491 ~ 27910890 (-) False si:ch73-204p21.2

Expression Profile