RNA id: XM_026926081.2


Basic Information

Item Value
RNA id XM_026926081.2
length 3470
RNA type mRNA
GC content 0.39
exon number 4
gene id pnoca
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27868240 ~ 27881903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGCAGGAGCCAAAGTCTGTCTTGTAATCGTGACTCTAAATTCAGAAGACTTCACCTGAGGAGCAGAGAACAGGAGACTACTGACGCTTTTTCATTTCACTCGTCTTCTCAGGACAGGTACACGTCTGCCCTCAGCACAGAATTTCAGCTATAACTACAATCAGTGTATAATGAAGATGCCGTTATGGGTTCTCCTGCTAATGGGGCTGTTTGTCCCCGGACGCAGTGACTGTCAGAGAGACTGTTTCTCCTGCAGCCAAATCCTTCCCAAAGACCACGGCTTTGACACACTGGTCTGTATGATGGAATGTCGCAGCAGGGTTTCTCTGGGCCTCACATGGGAGAGATGTCAGACCGCCTTGGAGGAAGAACCCCTGGCGTCCCTGTCCATAGGGAACTCGATGCTGAAAAGAGCCGAGGAGGAAGTGGAAGCTGTCCTGCCGATGGGTCAATCTGACGGCGGTCTGACGTATTCTGGAACCCTGCAAAGATTCGACCACATGGCACGAGCTTTGGGTTTGGACGAACTCAACCAAGAGAACCAAATCTCCCAGTTTAGCACGGCTGTTCAGCCTCAGCCTGCGCAGGAAGAACCCGAGGCTGCGGACTGGGAGCTAAAAAGCGACCAAGAGGGTGAACCGGTGAACCTCACCAAACGTTTCGGAGGGTTCCTCAAAAGCAAGTACGGCTACAGGAAGATCATTGACCCTGGTCGGTCAATGCAGAAGAGATACGGCGGCTTCATAGGCGTCCGCAAGTCGGCCCGCAAGTGGAACAACCAGAAACGCTTCAGCGAGTTTCTAAAGCAGTACTTGGGCATGACCACTCGAGCTAGCGAGTTCAACAGCGTGTCCACTGACATCACCCAGCAGAACGAGGTGTGAGCATCGTCAGTAGCGCTACACTTCCCCAGAAAAGCCTTCATCTGTTCACACACTTCTTAAttcacattcattaaaaaaatgacctttACAGCACAGTAGCAAATGTCCGAGTCCTCTGCCAAGAacgttttatttcttttctatcaggaaattttatttcatcagttatcagAAACTTCATTTTGTCAGATGATActgaaaaataacacacactgaacagtcAATATCAAGTGTTAGCCATTAACAGTGGGGTCTGACACTCGTAATTAAGACTTTAATCCCATGAAAGACAGCAAAGGTAACGTTGGGGATGTTTTAACTTGGAATTTGGTGTGCTAACTCTATCTATGCCTGAAACCgcatctactgtatatagtgcactagttagcctacattcacactagcaagtctCTCAGATCGCGTGTAATTTGTCTCTTTTGGGCGTGGCCTGTtcaacattttgtgttttttttttttaaactccgaTGAGAAACACTAGTAGCTATATAAAGTCTCTAAAGTGAACTAGATAAACGCAaatatttttcttcgtaatgtctctaCGTACACTCAACAGAGACACCAACagtctctgctacttccttcaaagcattttttcctcataatgtctctatacacatttaatgagaggtcgtgTATGTCAGGATATGAAGAAACAACGGttataagggttttttttttattcttgtgcgtcaaacagtaaatgggaacaaGTTAAAGGCAAGAACTAAAGTTGTCagcagggaactgaagaaataaCGGCTCGCACACATTataggattggtccgaggaatcgttCACGCTAATCGTCATATCTCTTTTCACAGTGAATTGAGAAAATTTCAAGGCAAATGTCGCCTGAAATGGCGGCTCAGTGTCGTTCACGTAGATAGGAAATAATTCACCTTTAGttttgtcgcttgctagtgtgaatgtcgcttgctagtgtgaatatTCAGTGCACTcctgaaatcccacaatgcattgcaaaTAGGTTAGCGTGCAAAGATAGTCAAGGACATGCGGGACACTCATAGTACATGTTGTAGTTTGTAAGGAATAGAGTGTTTTAGATACAAGGTGTGCTAACTAACACTAGGATCCCTGTACAATCACGACTGTTTTTCAGTTTCAAATATGCACATGATTTGtctcagttttaaaataataatattcatgaatgataaaaaataataataataataataacgtaaAAAAATCAGTAACTGATACATCCTCTAACACTTCCTATGAAGGtcatatttcatgtttataatgcattcataccATATGTCATTacacacattgttataattactgATGAGaatgcattacactttatagctACCCTTATTACGCATTATGAATTGTTGACAATGTCAGTAGtagtttataacacattataagccctttaaatgaattataccAGATAGTTTACCAGATAGGAAATCATACCAAGAAACTACTCaaagaactttttaaaaatgtaaatttaaggTTTAAAATCTACATATATGGCTGCAGAGGAGTTTGGGGCAAAGAAAATTCAGAGAAATAAGACATCGGTTGATGTAATAAACGTTATTGTTTatgtaaacctttttttaaaatgttatttctcACAAATACAACTTACGACTTATTATACTTAGGTTATAATATCACATGACTgtcaatgtactgtatatcagttACTTATAAATCATCTCTGACTAAACATTCATTAAGCAAACTAAAGCTGAATTTATTTGGTTCTTATggtgatataatgtgttataaacactgGTTATAATGCATTGTTTACCATTTTAAATTGCATTATAAACATTGCTTTAAACTTATGCCTTTCCACataaaaacaattataataacACGTGTAACGAAGTGTAATATgttatgaatttattcataggtcattcatacagtatataggtACATAcatatggccttcatagaaagtgttagcAGTGGTTCTGTGCtagtttttgttaaatgatgaaataacaGAAGTTCTTGGTGGGACTGTAGTTTGTTAACACGTCTAAAAGTAGCAAAATTCTAGAAATTTCCAGGAGGGCATGGTaagattttcacacactgtttacactcTTAGAGAAGAACGGTTCTTTAATGGTTCCTAATGCGTTCCACGTGGAGGAGCGACCAGCTGAAGAACCATTAAGCTTTCTATAAGCTTGTACAGCTCATCTATTCAGAGAATAAAACCACACTGACATCTAGAGGTCATTAAAACACGACAGTCCGTCCTCCCTATAAATGATGAAGCCCACTGTTATCGGACTTcgaggaagaaaaacagattcGGACAGCAAAGGAACCCGAAACGCTTCAATTTCACTGATAATACAGCTGTGAAAATCTTCTGCATCAGGTTTTTATTTCCTTACATCAGAAAAACAACACCAAACacttgtaatttaaaaaaaatatttatgtaaatgattatttatgactcataattcttttttttttaattttactgatAATCCATTATATTGCTCATCATATTAATtgtacatagaaaaaaaaaaacgatctCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204439 lncRNA upstream 26057 27840986 ~ 27842183 (+) True G172741
TU204395 lncRNA upstream 69060 27794382 ~ 27799180 (+) True G172719
TU204396 lncRNA upstream 69060 27794756 ~ 27799180 (+) False G172719
TU204062 lncRNA upstream 194760 27581718 ~ 27673480 (+) True G172414
TU204076 lncRNA upstream 216076 27622473 ~ 27652164 (+) True G172422
TU204556 lncRNA downstream 146097 28028000 ~ 28071081 (+) False LOC113533782
TU204586 lncRNA downstream 219604 28101507 ~ 28108665 (+) True G172858
TU204550 lncRNA downstream 237159 28119062 ~ 28122832 (+) True G172830
TU204603 lncRNA downstream 266674 28148577 ~ 28191912 (+) True G172873
XR_003403478.2 lncRNA downstream 354770 28236673 ~ 28244726 (+) False LOC113534053
XM_034308269.1 mRNA upstream 75028 27781468 ~ 27793212 (+) True hmbox1a
XM_026926006.2 mRNA upstream 95164 27768268 ~ 27773076 (+) True kcnk13a
XM_034308069.1 mRNA upstream 107374 27726878 ~ 27760866 (+) True tdp1
XM_026926101.2 mRNA upstream 400674 27156343 ~ 27467566 (+) False nrxn3a
XM_026926664.2 mRNA downstream 32501 27914404 ~ 27927660 (+) True map7a
XM_026926112.2 mRNA downstream 49271 27931174 ~ 27963120 (+) True scaf8
XM_034307887.1 mRNA downstream 52035 27933938 ~ 27963120 (+) False scaf8
XM_034307879.1 mRNA downstream 80517 27962420 ~ 28056561 (+) False tiam2a
XM_034307878.1 mRNA downstream 97500 27979403 ~ 28056561 (+) True tiam2a
trnak-uuu_7 other upstream 142961 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 402591 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 402591 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 402591 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 952810 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 1187817 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 1211588 29093491 ~ 29138776 (+) False nrde2

Expression Profile