RNA id: XM_034307840.1


Basic Information

Item Value
RNA id XM_034307840.1
length 1818
RNA type mRNA
GC content 0.46
exon number 16
gene id ak7b
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26349862 ~ 26360091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCCAGCTCTAGTTGCGAAGCAAcacaacctaaaaaaaaacaatatggctGCAGAAACTGAGGAACTCTCCCACCTCTCTAAACGCGTTTTTATCAATAATGTGGACAAATATACCTCAAAATATATCGCAGAGTTTTTGTCCTCGTGTGCTGCTGGAGCGTCCCGTGTTGCTGAACAAGTCGAGGATGAAGAGGAAAACGAATCATCCCAGAAAGGCACTTTCCGGATTGTTGGAACCGTTTCTGGGAAAACCGAGGAAAAGTCCAGTTTTGCAGTCGAAGAATATACTAACTTAACACGTGAAGAGCTTTTCCATCACCTGATGGAGTCGGATGTCGTCGTTTATAACATTAACAGCGAGCATGCTGATCAGATAGACGAAGCCTCTTGGGCGGTCTCAGcTCTTCACAAAGAAATCGATGCATTTCCTGGACCCAAGATGTTCATCTTAATCTCCTCGGTCATGACGTGGGCTCTGACTAAGACCCTTGATCCAAACGATCCAGAGATTTCTTTTACGGAAGAGGACTACAGGAGACGGAAACCGCATCCCAACTTTAAGGATCATATCTCTGTGGAGAAGCTTGTGGTTAAACTGGGAAAATCTAATCCGTCACAGTTCTCTACTTATGTGGTTGCATCTGGACTGCAATATGGAAAGGGAGAGCAAgcgtttcatttctttttcaagACATCGTGGCTGGGAGAGGAACGCGAAGTGCCGATCTTCGGAGACGGCTCCAATATCATTCCTGCTATTCACATCAGTGATCTGGCAGGgaTTGTACAGAATGTAATCGACCGTAAGCCGAAGCCGCAGTACTTTCTTGCAGTGGATGAATCACAGAATACCATTGCTGACATTATCAGCGCAATAGCGTTGGTGCTCGGGTCAggaaaaacccaaaacattcCAGAAGAGGACGCATTTTTCATAGAAGAATTGACACAAGCAGAAATTGATCGTTTGTTCATCAACCTTCGAATGGAAGCCATTTTTTTCACAGACAATTTCAGTATCAACTGGGTTTCAAAGAGAGGCATTGTTGATAACATCGACCAAGTCGTGGAGGAATACAAGCTCACCCGAGGCCTGCTGcctgttCGCATCTGTGTCTTGGGACCTCCTGCTGTCGGGAAAAGCACCATAGCTGAAAAGATCTGCAAGCACTACAAACTGCACCATGTAAAACTCAAAGAGACCATCACTGAGACTCTCGCGAACCTGGAGTCGCGTGTCCGCATAGAAGAAAGCAACGAGGACGATGAATCACATGAAGCACAGGAGCTTTTGGAGACACTGAAGAAGAACATCGAAGAAAACGGAGGCCGGTTGGATGGGCAGTATGTTATCCAAATCATGAAGGACAAGCTGAAGACTAAACCATGTAGAAATCAAGGATTCGTCCTGGACGGCTTTCCGAAGACATACAAGCAAGCTAAAGAGCTATTTTATGCCGAGGATGACAAAGCTACAGACGCGAGGTCCAATGTCAAAATCATCCCAGagtttgtGTTCTCTCTGGATGCCACTGACGAGTTCCTGAAGGAACGTGTGCTGAACCTGCCTGAGAGCGTGGTGCAGGGAACGTCACACTCCTTCGATAACTTTCTCCCACGTCTGGCCACGTTCAGAAAAAACAATTCAGAGGACGAAATTGTGCTAAACTACTTTGAAGAGCTGCTGATTCACCCTGAGCATATAGGTAGCACAGTTTTCTTTCAGTTCATGCTATGGGCAACAGAGGgctccaaaaataaaaaaaaagctcctaCTTTCTAGAGATCAACACTGATGACCCAGAGAATGTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203215 lncRNA upstream 571130 25682394 ~ 25778732 (+) True G171684
TU203168 lncRNA upstream 757113 25587489 ~ 25592749 (+) True G171647
TU203132 lncRNA upstream 827173 25518116 ~ 25522689 (+) True G171619
TU203104 lncRNA upstream 918940 25426891 ~ 25430922 (+) True LOC113534148
TU203020 lncRNA upstream 960357 25389366 ~ 25389505 (+) True G171523
XR_004579001.1 lncRNA downstream 271202 26625940 ~ 26686726 (+) True LOC117598331
TU203645 lncRNA downstream 434785 26789523 ~ 26789807 (+) True G172052
XR_004578997.1 lncRNA downstream 448318 26803056 ~ 26839478 (+) True LOC117598329
XR_004578998.1 lncRNA downstream 448318 26803056 ~ 26839478 (+) False LOC117598329
TU203694 lncRNA downstream 512379 26867117 ~ 26960238 (+) True G172099
XM_026926028.2 mRNA upstream 1522 26334822 ~ 26348340 (+) True LOC113533735
XM_026926029.2 mRNA upstream 1522 26334822 ~ 26348340 (+) False LOC113533735
XM_026926895.2 mRNA upstream 15806 26323399 ~ 26334056 (+) True galcb
XM_026926677.2 mRNA upstream 37355 26307077 ~ 26312507 (+) True LOC113534080
XM_026926019.2 mRNA upstream 131694 26213268 ~ 26218168 (+) True si:dkey-87k14.1
XM_026926048.2 mRNA downstream 50652 26405390 ~ 26419055 (+) False vrk1
XM_034307767.1 mRNA downstream 52941 26407679 ~ 26419207 (+) True vrk1
XM_026926532.2 mRNA downstream 548901 26903639 ~ 26914229 (+) True hhipl1
XM_026926627.2 mRNA downstream 649371 27004109 ~ 27006749 (+) True slirp
XM_026926030.2 mRNA downstream 653196 27007934 ~ 27125905 (+) True adck1
TU202966 other upstream 1031601 25315560 ~ 25318261 (+) False samd4a
TU202922 other upstream 1173030 25176376 ~ 25176832 (+) False LOC117598238
TU202767 other upstream 1342096 25003983 ~ 25007766 (+) True G171329
TU202761 other upstream 1349813 24994493 ~ 25000049 (+) False cx28.6
trnar-acg_3 other upstream 1920200 24429590 ~ 24429662 (+) True trnar-acg_3
trnat-ugu_12 other downstream 560620 26915358 ~ 26915430 (+) True trnat-ugu_12
XR_003403449.2 other downstream 801605 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other downstream 801605 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other downstream 801605 27156343 ~ 27465649 (+) False nrxn3a
trnak-uuu_7 other downstream 1370469 27725207 ~ 27725279 (+) True trnak-uuu_7

Expression Profile