RNA id: XM_026926114.2


Basic Information

Item Value
RNA id XM_026926114.2
length 1636
RNA type mRNA
GC content 0.50
exon number 9
gene id tfb1m
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28057562 ~ 28087407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTGCAACCGGAAGTTCAGAGCACGGCGCTGGGGAGGAGGAGGACAACGTGTTTCACTGTTTGGAAGAGGTGGCAGCATCCGGGAAAATGACGTCCTTTCGTCTGCCTCCTCTACCAACCATCAGCGAAATCATCAAACTGTATAACCTGCGAGCTCAGAAGCAGCTGTCACAGAACTTCCTCTTGGACTTGAGACTCACAGATAAAATCATCCGGCAGGCGGGGAACCTGAGgaacgcgtgtgtgtgtgaggtgggacCCGGGCCTGGAGGACTCACCAGGTCCATCCTCAACGCCGGTGCAGCTGATCTGCTGGTGGTGGAGAAGGACTCGCGCTTCATCCCGGGATTAAAGCTGTTATCCGAGGCGGCTCCAGGGCGAGTCCGAATCGTCCACGGTGATGTTCTTGCGTATGGGATGAACGCGGCTTTCCCAGCACACATCACGAAGAAGTGGGAAGAAGagcctCCTAATCTTCACATCATCGGGAATCTCCCCTTCAGCGTCTCCACTCCACTCATCATTAAGTGGCTGGAGGAGATGGCCAGCAGGAGCGGACCGTTCGTGTACGGACGCACGAGACTCACGCTGACCTTCCAGAAAGAGGTGGCGGAGAGATTAACCGCGAGCACTGGAAGCAGACAGCGCAGTCGTCTGTCCATCATGGCGCAGTACCTGAGCTCCGTCAGCACCTGCTTCACCATCCCCGGCCGAGCGTTCGTCCCCAAACCCGACgtggacGTGGGGGTGGTACACTTCACTCCTCTGGTTCAGCCACACATCCAGCAGCCCTTTAAGCTTGTGGAGAAAGTGGTCAGGAACGTCTTTCAGTTCCGCAGGAAGCACTGCCACAAAGGACTCGAGATGTTGTTTCCCGAGGCTCAGAGACTCAGGATGACGGAGGAGCTTCTGCGGAGCGCCGACGTGGACCCGACTCTCCGTCCCCCCGACATCTCCATCAGCCAGTTCAGAGCTTTAGCGGACGCCTACAGCAGGCTGTGCAGAGAAGACCACACGCTGTTCAGCTACGACTTCAGAGAAGAGCTGAGGCAGAAGCGTCAGAGCCACAGACAGCTGCAGTGTTGAGTGTAGAAGAAACAATGGCTTGGAGGTAAGATggtgtagttttattttatatagatgTGAAGGATATCTGCGGTATTTAATGtactcctgaaaaacaaaaagactgtAGTTCATATATTTTAAGAAAACGCTGGAAATGAAAGATAAAATGCGATTGTAATCCTCAGTGCAATCACACGAGGCCCTTTATGAGCAGATTCAGACctgaaaataatcatttttgtaGTTATTCAGgccatttctctttctcagaGCTGTTGAGAAGAGAGTTTAGACTTTGACTCTGAATTGCTGTCATATAGCAAAGTGACAGCAGCGTCGTAATCGCTTCAGCGCACAGAGCGCATCCGTAACGTCGAGCAGTTCAGAGGAAAATGTTTCTCTAGTGACTTTGGAGAGAAAGTTTCAAGACTTCTGAGGTTATTGCACAGCAGAAAtaggaagtaaataaataaataaataagtttgaTGGCAGATTTTCACTGTTACAGAAGCGTAATGCATATGAAATTTGGgtataatattagaaatatttttttcgtaccacta

Function

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204645 lncRNA downstream 13314 27960969 ~ 28044248 (-) True G172903
TU204668 lncRNA downstream 120734 27933981 ~ 27936828 (-) True G172925
TU204486 lncRNA downstream 222722 27833532 ~ 27834840 (-) True G172784
TU204484 lncRNA downstream 269834 27787322 ~ 27787728 (-) True G172782
XR_004578961.1 lncRNA downstream 289461 27764605 ~ 27768101 (-) True LOC117598276
TU204760 lncRNA upstream 42766 28130173 ~ 28135542 (-) True G172996
TU204777 lncRNA upstream 67892 28155299 ~ 28158417 (-) True G173012
TU204790 lncRNA upstream 82867 28170274 ~ 28170878 (-) True G173020
TU204797 lncRNA upstream 93790 28181197 ~ 28223887 (-) True G173025
TU204844 lncRNA upstream 257032 28344439 ~ 28344767 (-) True G173067
XM_034307731.1 mRNA downstream 146715 27899482 ~ 27910847 (-) False si:ch73-204p21.2
XM_034307730.1 mRNA downstream 146716 27899482 ~ 27910846 (-) False si:ch73-204p21.2
XM_034308367.1 mRNA downstream 165252 27882999 ~ 27892310 (-) True znf395a
XM_034308293.1 mRNA downstream 215366 27794420 ~ 27842196 (-) False kif13ba
XM_034308294.1 mRNA downstream 215367 27794420 ~ 27842195 (-) False kif13ba
XM_034307957.1 mRNA upstream 8390 28095797 ~ 28106204 (-) False LOC113533853
XM_026926266.2 mRNA upstream 8390 28095797 ~ 28100883 (-) True LOC113533853
XM_034307958.1 mRNA upstream 14474 28101881 ~ 28105767 (-) True LOC117598250
XM_034307959.1 mRNA upstream 20687 28108094 ~ 28115465 (-) True LOC113533857
XM_026926057.2 mRNA upstream 124213 28211620 ~ 28215567 (-) True LOC113533755
TU204662 other downstream 145018 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 146672 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 146672 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 2475035 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2798200 25258839 ~ 25259362 (-) True G171569
TU205159 other upstream 749485 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 813497 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 813497 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 813497 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 813497 28900904 ~ 28908552 (-) True stmn4l

Expression Profile