Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026926270.2 |
| length | 2532 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 15 |
| gene id | mpp5a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 23024656 ~ 23052674 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0002011 | morphogenesis of an epithelial sheet | biological_process |
| GO:0055008 | cardiac muscle tissue morphogenesis | biological_process |
| GO:0045176 | apical protein localization | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0045199 | maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0021744 | dorsal motor nucleus of vagus nerve development | biological_process |
| GO:0048699 | generation of neurons | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0016332 | establishment or maintenance of polarity of embryonic epithelium | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0001917 | photoreceptor inner segment | cellular_component |
| GO:0016324 | apical plasma membrane | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU201724 | lncRNA | upstream | 5204 | 23006024 ~ 23019452 (+) | True | G170484 |
| TU201722 | lncRNA | upstream | 20825 | 23003595 ~ 23003831 (+) | True | G170482 |
| TU201509 | lncRNA | upstream | 32757 | 22985094 ~ 22991899 (+) | True | G170295 |
| TU201508 | lncRNA | upstream | 32757 | 22986696 ~ 22991899 (+) | False | G170295 |
| TU201560 | lncRNA | upstream | 39726 | 22984577 ~ 22984930 (+) | True | G170325 |
| TU201828 | lncRNA | downstream | 97833 | 23148674 ~ 23149505 (+) | True | G170567 |
| TU201829 | lncRNA | downstream | 98701 | 23149542 ~ 23150084 (+) | True | G170568 |
| TU201871 | lncRNA | downstream | 324397 | 23375238 ~ 23375438 (+) | True | G170610 |
| TU202007 | lncRNA | downstream | 727428 | 23778269 ~ 23779227 (+) | True | G170717 |
| TU202006 | lncRNA | downstream | 728482 | 23779323 ~ 23782089 (+) | True | G170716 |
| XM_034307809.1 | mRNA | upstream | 2261 | 22861807 ~ 23022395 (+) | False | LOC113533992 |
| XM_034307810.1 | mRNA | upstream | 2261 | 22861808 ~ 23022395 (+) | False | LOC113533992 |
| XM_034307811.1 | mRNA | upstream | 42505 | 22879563 ~ 22982151 (+) | False | LOC113533992 |
| XM_034307804.1 | mRNA | upstream | 42508 | 22861807 ~ 22982148 (+) | False | LOC113533992 |
| XM_034307806.1 | mRNA | upstream | 42508 | 22861807 ~ 22982148 (+) | False | LOC113533992 |
| XM_026926402.2 | mRNA | downstream | 16719 | 23067560 ~ 23107949 (+) | True | itsn2b |
| XM_026926847.2 | mRNA | downstream | 377459 | 23428300 ~ 23495384 (+) | False | esrrga |
| XM_034308369.1 | mRNA | downstream | 377461 | 23428302 ~ 23495384 (+) | False | esrrga |
| XM_026926850.2 | mRNA | downstream | 377461 | 23428302 ~ 23495384 (+) | False | esrrga |
| XM_026926851.2 | mRNA | downstream | 377461 | 23428302 ~ 23495384 (+) | False | esrrga |
| XR_004578924.1 | other | upstream | 2261 | 22861807 ~ 23022395 (+) | False | LOC113533992 |
| XR_004578925.1 | other | upstream | 2261 | 22861810 ~ 23022395 (+) | False | LOC113533992 |
| TU201530 | other | upstream | 133886 | 22862027 ~ 22890770 (+) | True | LOC113533992 |
| TU200872 | other | upstream | 1204597 | 21819281 ~ 21820059 (+) | True | G169692 |
| TU200725 | other | upstream | 1350195 | 21669907 ~ 21674461 (+) | True | G169577 |
| trnah-gug_10 | other | downstream | 911143 | 23961984 ~ 23962055 (+) | True | trnah-gug_10 |
| trnah-gug_11 | other | downstream | 914007 | 23964848 ~ 23964919 (+) | True | trnah-gug_11 |
| trnay-aua | other | downstream | 914193 | 23965034 ~ 23965106 (+) | True | trnay-aua |
| trnah-gug_12 | other | downstream | 1375928 | 24426769 ~ 24426840 (+) | True | trnah-gug_12 |
| trnar-acg_2 | other | downstream | 1376114 | 24426955 ~ 24427027 (+) | True | trnar-acg_2 |
