RNA id: XM_026926376.2


Basic Information

Item Value
RNA id XM_026926376.2
length 4400
RNA type mRNA
GC content 0.52
exon number 18
gene id ppp1r13ba
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28128719 ~ 28165654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACTTCAGCTCCGAGCCTGTAATGAATCACACACAAGCAGAGGATCTctacacacaccactaacacactcagatggagatgtgtgtgtgtgtgtgtgaagagaagcTCAGATGATCATCCTGCCAGATACCGATCTTCATCCCCGTGTTTCTGAACTCCAGTGAGCAGGTTCTGACTGAGGTTCCCGTCACTGCTGAGACACGGTGTAAAGACGTGGTGGAGTTCTGCAGGGAGGCTGGAGAGAGCGGCTGCCGCCTCGTACAAGTCTGCAAAGGAAAAGAGAGAGCGATACCTTCAGATCACCTGATGCTGGAGTACCTGCAGAAATGGGGTCAGAGGAGGCAGGAGGTGAAGTTTTACCTGCAACATGAGAACGAGCGCAGCAGCAAGgGAAGACAGACATCAGAGCAGCTGAGCAGAAGGATGAAGGGGAGGATGGACAGATTCTCTGTGAATGGgatgggGACTCCGCGTGTGGAGCTGACTCTGTCTGAGCTTCAGGAGATGGCTGTACGTCAGCAGCAGCAGATCGAGGCTCAGCAGCAGATGCTCTTGGCAAAGgagcaGCGTTTGCGCTATCTGAAGCAGCAGAATCCTCATCAGGGCCCGGCCACGCCCGAATCGGAGAAACTGCAGAGGCTGAGGGAGAGAGTGGAGAGTCAGGAGGCCAAGCTGAAGAAAATCCGTGCCATGAGGGGGCAAGTGGACTACAGCAAGCTGATCAACGGAAACCTGTcGGCAGAGATCGAGCATGTGAGCAATCTGTTCCAGGAGAAGCAGGTGGAGCTACAGCAGGCCGTGATGAAGGTGGAGCACCTCACACACCAGCTGGAGGATCTGAGAAACAAACGCATTACAGAGTCACAGCCTGCAGGGGGCAGCGCCCTGGAGCTCCACAAACTGTACCAGGaactgcagATGAGGAACAAGCTGAATCAGGAGCAGAACAGTAAACTCCAGCAGCACAAGGACCTGCTGAACAAACGCAACCTGGAGGTGAGCATGATGGACCGACGCATCGAGGAGCTGAGAGAGCGCCTCTACAGGAAGAAAGctgagTTAGGGCGGATGAGCACTCCTTCATCCCCTCAGTCTGTTCCCATCACCTCTGGTCGTGTCGCAGCCGTGTTTCCCTACATCCAAGTTCCCACGGTGACCGGGAGGCAGGACGGAGGCTACCCTTTGACCCCTGACACACTTAAACCACACCCACTTCCTGCTCAAATCAGCCACACTCGATCCAGATCAGACGACGATAGAGTGAGGAAGCCTACGGGACCGTGGAAGGTCTCAGACCTAGACATCGTAGTGAACCGTGAGGTGACCCTTGACCCCAGAGACCATCCCACCTCAAACGATGCAAATTGGAACATGGCCTCTCTCAAAGCCCCGGACTGGAAGGACACGAGCCAGAACCCGGGCAAAATGGCTGCCGGTGAAAAGGGATCTTCTAAAGTACTGGGCACAATAACAACCTTGTCCAAACATCCGCCCCCGATCTACGGCACGTACCCCAGCGTGGGGCATCACTCCACCGTCTGTGCCACTAACTCTCTGCCCCGCTCAGCACCAGGCACTCTGTCCTGGCACAAATCCTCCGGTTCCTCATCGCAGCAGATCCAGCAGAGGATCACCGTCCCTCCGAGTCCTACATCCTCGGCCGGCTCTCCCGTCTTACCCCCGAGCGAGAGAAGTAATGACGCCCCTCTGGCTGCAGCGGTTCGCCCATTTTATACGGACCGGGGGTCACGACCTCAGTCTCCGCGGAAAGGTCCTGCTACCATGAACTCCAGCTCCATCTATCACGTCTACCTGCAGCAGCCAACAGCCAAAAACTACCAAAGCAGCAGCACCAGAGCTGCAGTCAAAGCAgTCTATGGAAAGCCGTTGCTGCCAAGCTCCGTCTCCTCGTCCCCAGTTCCCTTCCAGTCCTCCAGAGACGATTCGGAGCGTGAGTCTGAACCCGagattacccacaatcctcAACCCAGCGTGGAGAACATCCCTCGGCCCCTGAGCCCCACTAAACTCACCCCGGCTCACTCGCCCCTGCGCTACCAGAGCGACATCGACCTGGAGGTGCTGAGGAGGAAGCTCGCTAACGCTCCTCGTCCTCTTAAAAAGCGAAGCTCCATCACCGAGCCTGAGGGTCCGAACGGTCCCAACATCCAGAAACTTCTCTACCAACGCTTCAACACGCTTGCTGGTGGCATGGAAACGGTTACGCCATTCTTCCAACCAGACACCGCCCTTAATTTAGCAGGCGATGTTGATTCTGTTAATGGAAATGTAAAGGAAGGAACTATAAAAGCTGCCGTGGCACCAACACCAGCGCCTGTTTCAGAGCCTGCACCATCACCAACATCCAACACTAATGAGAATCAACCGGAGCAAACAGCTAATCATACAGAAACTCCGGAGATTACAGACACCACGGATCCTAAAGAAGGTCCTGAGGACAGTCATAACAACAATCAGTCGTCGTTAGATGAAGACGCAGAGTCCACGCCAGCGGAGAAAGAGGACACGGAGCAGAACATGGTGAAGAGGACGAATCTGAAGAAGCCCGGCTCTGAGAGAACGGGTCATGGTCTCCGAGTGAAGTTTAACCCGCTGGCGCTGCTCCTGGACGCATCTCTGGAGGGCGAGTTTGACCTGGTGCAGAGGATCATATATGAGGTGGAGAACCCCAGCACTCCGAATGATGAAGGCATCACGCCGCTCCACAACGCCGTGTGTGCTGGTCATTATCACATCGTGAAGTTCCTGCTGGATTTTGGAGTGAACATCAATGCAGCAGACAGCGACGGATGGACGCCGCTGCACTGCGCCGCCTCGTGTAACAGCGTACATTTGTGTAAGCTCCTGGTGGAGTCAGGGGCGGCCATCTTCGCCACCACTATCAGCGATGTAGAGACGGCGGCGGATAAGTGTGAGGAGATGGAGAACGGCTACGTGCAGTGCTCGCAGTTTCTCTACGgtgTGCAGGAGAAGTTGGGGGTGATGAATAAGGGGACAGTTTACGCTCTGTGGGATTACGAAGCTCAGAGTCCAGATGAACTCTCGTTCCGTGACGGAGACGCTTTAACGGTGCTGAAGCGCAGAGACGAGAGCGAGACTGAGTGGTGGTGGGCCAGACATAATGATAAGGAGGGCTACGTTCCCCGAAACCTGCTTGGGttGTACCCGAGGATTAAACCCCGACAGCGGTCCCTGGCGTAGCGCCCCCTGATGGACAGGAGCCCCAGCTGGACATTTTGCCCCATTTTCATCTTTTAGTGCCACCAGGATAAGAAGAGGGCGTGGCAGCTAGAAACTGAGACTGAAGCTTGGATTTATTTATCTGCCAGAAGAGATTTGGTGATCAGCGCTCCATTTTCAGCCTGCAAAATGGATCATatttgggtcttttttttttaaatcctgcacCCTTTCACCCAGAAGTCTGTGGGGTGAAAACACACcagttttcctgtttccttttgTACTGGTGTGAGTTTGTGGGACGTGAAAGTATTGACACTCTGAGACAGCTGAGGAAGAgagttttgtgtatttttgttggACAAAGGAAAGACTCAAGGACAGATCGTTGTCTACTGAGCAGCTGATTCgaagagaggaaggaaggaaagaaggaaggagatAGAAagtgcagagagagacactgaaatAAGAGTGAAGAGGAAATATTggagagtttgtgtgtgcgGTCATGGCGGTATGAGAGATGAGAAATAGTACGTTAAATAAGCGATGGTGGCAGTAAAGTCGTGAAAAATGgtaaaagtctgttttttccatccaggaggaaaaataaaagctgtacaCACCTGCATTTATACGTTAAAGCCAAATGTACACGAACAGCCGAGTCGTGTCTGGTGTGTAAAAGTTTGCTTGTTTAAGTTTGCCTTGGAGCCACGAGGATAATGTAGCTACAGCCTAAAGTTTAGCGTATCATCACACGCTCGCCATAAAAGTCATTGCTAAGTTTCATAAAATAGCAGAAAGCAGAGTCCTTTACAGAATGTCTGAAGCTAAACTGGTGGCCTTGTAGCTGAAGTGAAAAACTAACGAAGCAAACCCCAGACTCCGACTGCGTCTCAGCCGATTGTTTACATTTGgtgttaataaaatgtaatttagccTGAATTGTTTTATATGTCGTACTGATCTCCTCCTTGTTTTTAAAAGCTCTTTATAACACAGACAAGATGAAATGCTTTAAGGGTTCTGGTGTATGAGTGATGTACCTGggagcaaataataataatgatcagaGATCATAATAATGCAGAGTAACAGgcctgaatctgaatctgaatctgcgACATCATTCATGCCACATGCCATGTAAATGTGCACAATAAAGACGTTCTCACATTGGGATCCATCA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0008134 transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204550 lncRNA upstream 5887 28119062 ~ 28122832 (+) True G172830
TU204586 lncRNA upstream 20054 28101507 ~ 28108665 (+) True G172858
TU204556 lncRNA upstream 57638 28028000 ~ 28071081 (+) False LOC113533782
TU204439 lncRNA upstream 286536 27840986 ~ 27842183 (+) True G172741
TU204396 lncRNA upstream 329539 27794756 ~ 27799180 (+) False G172719
XR_003403478.2 lncRNA downstream 71019 28236673 ~ 28244726 (+) False LOC113534053
XR_004578977.1 lncRNA downstream 71019 28236673 ~ 28243954 (+) True LOC113534053
XR_004579037.1 lncRNA downstream 223542 28389196 ~ 28435398 (+) True LOC117598375
TU204884 lncRNA downstream 365805 28531459 ~ 28531691 (+) True G173106
TU204932 lncRNA downstream 604371 28770025 ~ 28772065 (+) True G173140
XM_034307898.1 mRNA upstream 866 28123003 ~ 28127853 (+) True ptp4a2a
XM_026926115.2 mRNA upstream 59016 28060576 ~ 28069703 (+) True LOC113533782
XM_026926116.2 mRNA upstream 59016 28066519 ~ 28069703 (+) False LOC113533782
XM_034307880.1 mRNA upstream 72158 27999022 ~ 28056561 (+) False tiam2a
XM_026926050.2 mRNA downstream 499 28166153 ~ 28170563 (+) True sdsl
XM_026926049.2 mRNA downstream 499 28166153 ~ 28170563 (+) False sdsl
XM_026926569.2 mRNA downstream 15446 28181100 ~ 28208862 (+) True daam1a
XM_034308120.1 mRNA downstream 28616 28194270 ~ 28208862 (+) False daam1a
XM_034308145.1 mRNA downstream 52038 28217692 ~ 28225654 (+) True jkamp
trnak-uuu_7 other upstream 403440 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 663070 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 663070 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 663070 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1213289 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 904066 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 927837 29093491 ~ 29138776 (+) False nrde2

Expression Profile