RNA id: XM_026926402.2


Basic Information

Item Value
RNA id XM_026926402.2
length 7069
RNA type mRNA
GC content 0.46
exon number 39
gene id itsn2b
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23067560 ~ 23107949 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTCCACACCGGATTGCAGCGAAGGGCCGCGAACCTCAGAGCCGTCAGCCATGTTGTATCTCTGACAGCACTTTCCGCAACAGGTTGTCAGcgtttaaggggaaaaaaaatcttagggTAGCTTTCAACAGTTTTGATCATCGCTACTTTATATGAGAGGACGTTGAAAGAAGATATTTACACCTCCATGGGATTACACACAGTCAAAAATATCCATTTCTCGTTCGTGGTGGAATAGTCAAGATGCCTGAGGTAGCAAGTTGAGGCGAGGACCAGGACTACTTTTCCTGTTTCCCCACACCCCCACCTGCAACCATGAATGGTGGCCGCAGTATATGGGCTATAAGTCCAGAGGAAAGGGATAAACATGATCAGAAATTTGATACCCTCTCCCCAGTCCAGGGTTTTGTGACTGGGGAAAAGGCACGGAGTTTCTTTCTGCAGTCAGGCCTCCCTTCCTCTGTGCTGGCTGAGATCTGGGCTCTGGCTGACATGAACAAGGATGGGAAAATGGACCGTTTGGAGTTCTCTGTTGCCATGAAACTGATTAAGATGAAGCTGCAAGGTCAGAATCTTCCTTCAGCTCTGCCTATCATCATGAAACAGCCACCAGTACCTGCTCCTACCATGCCACTAACACCACTTGGGATGGGATCCACGCAAAACATACCCATGGTGCCCACTATGCCTGTTCTTACCCCCATGCCGCTGCCCTCCATAAGTCCTATGCAGGGCATGACTCCCATGATGCACACTGGACTGACCATGCCAATAATTAGCGCTCCTCCTCTGGCCAATGGACCTGTGGGAATACTCCAGCCCACTCCTGTTTCGCTTACTAATGCTCTCCCACTGAACAGTTACTTCACTTCCTCTCCATTGGGTTTTTCTTCCACTCCCAAGACATCAGCTCTCCTGGACCTGGGTTCAAGCAGCTCCAACTCTTCTTCCACAACATCTTTAGCTAGCAGCTCTCCTCAGAGTGGCCCTGTGGACTGGGCTGTGCCACAGGCATCCCGGCTTAAATACAGACAGCAGTTCAACAGCCTAGATAGGCAGATGATTGGCTATCTGTCAGGCCCTCAAGTGAGGAACGCAATGGCTTCAACATCATTAAGTCAAACCCAGCTAGCCACTATTTGGAACCTGGCAGATGTAGATAAGGATGGTAAACTAAAGGCAGACGAGTTTATTCTGGCCATGCACCTGGTCGATATGGCCAAGGAAGGACAGGCTCTGCCTCTTGCTCTTCCTGTGGACCTTGTACCCCCATCACTCAGGGGGACCGTTGGCGATTCACTGAATGGATCCACCAGTTCATCCATCTATGCATCCTTGTCTGAGGAGTTTACTGACGCTGATCCGCCACAGAAATCCAAGAATAACTTGACATTTGAGGACAAGTTCAAGAAAAACCTGGAGCGTGGAAATGCAGAGCTGGAGAAACGGCGCCTGGCTTTGCAGGAGCAACAGCGAcgtgaggaggagaggagagcacAAAAGGCCCGTGAggagcaagagagaaaagagagggaggCACGTGAGTTGGAgctgaggaggaagagagaagaggagcaGAGACTGGAGCGACAGAGGGAGCTAGAAAggcagagggaggaggagaggctCAGAGAGCTAGAGAGGAAAGAGGCAGCTAAGAAGGAGCTAGAGCGACAGCGCCAGTTGGAgttggagaagaagaaaaagcaggACCTCCAGAACCAGAAGAGTCATGAGCAAGAGGTCGTCATTCACTTGAAGTCAAAGAAGAGGAATCTGGAGTTGGAGCTTGAAGCTGTGGGCAACAAGCATAAAGAAATCTCTGAAAAACTGAGAGATGCCCAGGCCAAGAAGAAAGTCCAGAAAATTGAAGTGGATCGTATCAACCAGAAGAGAGATGGCCAAATAATAGAAATCAACTCATTGCAGCAGCAGTTTGAGgagttGCAGAGGAAAGTGGTCCTGTTGGCTCCAGAGCAGCAGAAGATGAACGAGATGCTTCGAAACGTGAACCTGAACAGCATGCCAGcTTCCACAATGACCACTTTACAGAAGAGTGTTACAGATAAGGACCTCAGCTGTAGAAAGCTGAAAGAACAGCTTGATGCTTTAGAGAAAGAGATGGCAGCAAAACTGGGTGATATGGATCAGTATAAAAAGGACATACAGGACCtcagagagagccagagagatcAGCAGTCTGCACTAGACAAATTGCGTAGTCTCAAAGAAGACAAACTCAGAGAGCTCAAGAGACGCAAAGAGGAAGAAttggagaagaagagaagggaGGAGGAAGAACAACGGCGCATCAAACAGGAGAAGGAGCGTCAGTGGCAAGAGAAACTGCGGCGCgatgaggaggagagacagaggaaacTCCAGGAGGAACGAGAGGCCAAACTccgagaggaggaggagagagagaggcaggctCGTCTACAGGCTGCCAAAGAACAAGCAGAAAGAGAGCGCAGGGCatatgaggaggaggagaggaggcggaaggaagaggaggaaaggaaaaggagggaggaggatgagaggagagagcaggagaggaggaggcgtgaggaggaggaggatcgCAAGAGGcgagaagaggagaggaagaaattagaggaagaaaggaggaaactggaggaggaaaggaggaaGCTGGAAGAGGAGAGGCGGAGGCAGGAGGAGGAAAGGCGGAGGCAGGAGGAGGTAAGGCGgagacaggaggaggagaggcgggaagaggagaagaggagacaggaagaagagaagaagcgTGAGGAGCGCAGGAGGGCAGAGGAGGAGCGacgagaagaggagagaaggaaggaacgagaagaagaagagaggaggcGACAGCGAGCACAGGAGGCAGCCATCAGGGATGCAGAGGAGCGGAAGAGGAAAGATGAGGAGGAAGACCGGAGGAGACGAgatgaggaaagaaagaaacaagatgAAGAACGGAGGAGAAAACAGCAAGAAGAGCAGGCTGCTGCTGCAAGGctgaaagaagaaaagcaaaataattcaaaatcaGACATTGTTGCTGCACTTCTCAGAGGATTGGAGGAGAGGAAAGgtAGTAGACAGCCCCTGGGCAAGTCACACAGgaaatcagcagctctgaccaaATTTAAAGCACTCTACCCCTTCTCGGCCAGGAATGAGGAAGAACTCTCTTTTGAGACTGGTGATATAATTGAGgtgGATGAGACAGTTGAAAGAGAGGAGGGCTGGCTTTATGGAAGTTTTCAGGGCAAAATGGGCTGGTTTCCTGAGAGCTATGTAGAAAAGCAGCACAAGCCAGAGACACCAAGTACTAAAGCAGCTCTTAAACCGCAGGCCTTGCTGTCGACCTCTCGCAATGTTACAGAAGCTTCTGTTCACAGTGGATCAGGCCAGAACTCTGCATTCACCCGCACTCATGCCATGGGCAGCATGTCCACTGAGCACCGTCAGgtgGTGGAGAAACTGCAGGTTAAAGCTTTGTGTTCTTGGACAGCTAAAACTGACAACCACCTCAATTTCTCCAAGGACGATGTGATCATGGTTCTGGAGCAGCAGGAGAACTGGTGGCTAGGGGAACTGAATGGAATACAGGGCTGGTTTCCTAAAACTTACGTCACGGCCCTGAACAGCAGCGACTTGCCTGCAgaTTCCACTGAGGGATTTGactcagcagcagcagatgtCTCTTCCCTTGAGGaaTTTGTGGCTCTCTATACTTACGAAAGCCCTGAACCTGGAGATTTGACCTTCACTGAGGGAGACACCATCCTCGTGtcacagagagaaggagagtggTGGAGAGGCAGCATAGGAGACCGTTCTGGACTCTTTCCCTCCAACTATGTTAAACCCAAGGAAGCTGATAATTCAGTCCTGAAACCTGGCGTGCTTGGGAAAAAGCCAGAGGTAGCTCAGGTGACGAGTGCATATACGGCTTCAGGGACAGGACAACTGAATCTGTCTCCTGGTCAGCTCATCGTCATACTTAGTAAAAACCACTCTGGCTGGTGGCTGGGAGAACTGCAGGCACGGGGTAAGAAGCGACAGAAGGGCTGGTTTCCAGGGGCTCACGTTAAGCAGCTGGGCTCAAATAGCGGCAAGTCCACACCTGCGATTGTAGCAGCTGGTCAGGTTATTGCCATATATGACTACACAGCAGCAAACCAGGACGAGCTCAGCTTCTCCAAGGGTCAAATCATCAATGTGCTGGATAAGAGCGATCCTGACTGGTGGAAAGGAGAAATCAATGGTGTCACAGGCCTTATCCCCACCAACTATGTGAAAATGACCACCTCTGAATCTGACCCTAGCCAGCAGTGGTGTGCTGACCTGACGAGTCTAGACTCCATGAGCTTGCAGGAAAAGAAACGGCAAGGCTACATACACGAGCTCATAGAAACAGAGGAAAGATACATGGAGGATCTTCAGCTGGTTCTGGAGGTGTTCCACAAGCCAATGTCTGAGTCAGGCCGTTTAACAGAAGCTGAGATGAACGTGATTTTTGTGAACTGGAAAGAGCTCATCATGTCCAACACCAAGCTGCTCAAAGCCCTCCGAGTGAGGAAGAAGACGGGAGGAGAAAAGATGCCAGTGCAGATGATAGGTGACATCCTAGCTACTGAGCTCTCACATATGCAGGCCTACATTCGCTTTTGCAGCTGCCAGCTAAATGCTGCTGCATTGCTGCAACAGAAGACTGACCAGGAGCCAGAATTCAAAGACTTCCTCAAGAAAATTGCCACAGATTACCGCTGTAAAGGAATGCCTTTGTCCAGCTTTTTACTGAAACCTATGCAGAGAATCACACGTTACCCTCTCCACATCAAAAATATTCTTGAGAGCACCCCTGAGAATCATGTAGATCATGCTCAGTTGCGAGAGGCTCTAGAGAAAGCTGAGGAGCTGTGCTCTCAGGTGAATGAGGGcgtgagagagaaggagaactCTGACCGACTTGAGTGGATTCAAAACCATGTCCAGTGTGAGGGAATCACAGAGAATCTGGTTTTCAACTCTTTGACCAACTGCCTTGGTCCACGAAAACTCCTCCACAGTGGGAAAATGTTCAAGACCAAGAGCAATAAGGAACTGTATGCTTTTCTTTTCAATGACTTCCTGCTCCTAACCCAAGCTGTCAGGCAGTTCACTTCTTCAGGCTCAGACAAACTCTTCAGCCCAAAGTCCAATACACAGTACAAGATGTACAAATCACCTTTGTTCCTGAATGAAGTCCTGGTAAAGATGCCATCTGACCCATCCAGTGATGAGCCAATCTTCCACATCTCTCACATTGACCGGGTTTATACCCTTAAAACAGATAATATTAATGAgagGACTGCATGGGTTCAGAAGATCAAAACTGCATCAGAGGAGTTCATTGAGACTGAGAAAAGTAAACGAGAGAAGACCTTTCAAGCTCGCTCAATGAAAGCCAGTGGAATTGGCCGTCTGCTTGTAACTGTCCAAGAGGCAACAGAACTTAAATCCTCTAAACCAAGTGGAAGGTGCAGTCCGTACTGTGAAGTAACCATGGGGGCACAGTGCTACACCTCTCGAACTGTGAATGACACGCTAAACCCAAAATGGAACTTCAACTGTCAGTTCCACATCAAGGACTTATATCAAGATGTGCTGTGCATCACCATTTATGAACGTGTGCAGTTTGCGCCTGATGAATTTTTGGGTCGGACAGAGCTCCCTGTGGCCACCATCAAGAAGGACCTGGAGAACAAAGGTGCGGCAACGAGAAGACTGCTGCTTCATGAAGTATCTACTGGAGAAGTCTGGGTCCGTCTTGATTTTCAACTGTTTGATAGCAAAACCCCTAAATGAAAGGAATAATGTTCTGTTATGGACACTGAATAGCTACATGTTGTTTATTCTTCAGATCTTCCTTACAAAACACCTTGCCTTAAAATATCCTCAGCTACTGTGGAACATACTACTGAATGTGTGACTTTTCTTGACTTTTCTACTCTGATGATGCCAAGTTTATGCCTTTTCGTAGAATTATGTGACCCAAAATGGAGGAAATGTAAGCAATCTGCAGTTTTGCCTCAATTCTTTATCACTGGATGTAGAGATGACTCAGGATTTCTATTTTCCTTGAATATACTGTCTATTTTGCTGTATTAaaggattttttatttactttgatCTTTTGTAGGTCAGGATTGGCACTTGATCTTGACTGTTATGGAAGAGAACACTacgtttaaaattttttaacagTCTGTGTAAcctaatactgtataataatttaagcatttattcAGATATAGAAATGCTTTTTCACAAAGATTTTGCTAAGGTAATAATAGATAACCTGTTATTTTCTTTGAGCGATTCTGAGTTTATTTTACAATGGTACAAATGAAGTGATTACCCAAGAGTGACTTTACAAGCTCTAATCACTGTTGATTTTGTGTgagttgtatttatttttaatttatgcgTTTCTGACTATCCACATTTCCCAGCTCAAGATGTTCATAATGCTTGACATTGACATCCCCTCCATATTGCAAAAATTTTCCTGAAACCAGCTGTACATTTTCTATGTTTGTTTGAAAATTAGCTACATATTTTGAtagatttaaatgttatatagtTTTAAATTCCCCTTTATGTTGTATTTTGGTTCAGTTTTACCTGCTGGTTTTCAGGCTTTGCACAGAGTTGCTTGAGCATGACATAAGCGAAGTATTAAAtatgcagaggtgccaacattgttaacaagaaaatcctagtaGGGgacaaaacagaattttatcaaaaaaaaaaaaaaaaaaaaaaagccctagCATATGTGGGTAAATAGGATGCCTTCATGTTAATgccataaatggaaaaaataatttgttgaactgatatttaactgCAATCTGCAGATATGCTTGTACTTATAAGCAAGCAGCTGAGTGTACAAGTTcaatttatttgaaattgtttttcaGTTGTTGCAAAGTTAACAATTGTATGTCTGGTTTGCAGTCCCAAATAATGTTCAAATTATGTTGCACATAATAAACTGTCTACAAATGTTGCGGAAGATA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20045 ITSN; intersectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201724 lncRNA upstream 48108 23006024 ~ 23019452 (+) True G170484
TU201722 lncRNA upstream 63729 23003595 ~ 23003831 (+) True G170482
TU201509 lncRNA upstream 75661 22985094 ~ 22991899 (+) True G170295
TU201508 lncRNA upstream 75661 22986696 ~ 22991899 (+) False G170295
TU201560 lncRNA upstream 82630 22984577 ~ 22984930 (+) True G170325
TU201828 lncRNA downstream 40725 23148674 ~ 23149505 (+) True G170567
TU201829 lncRNA downstream 41593 23149542 ~ 23150084 (+) True G170568
TU201871 lncRNA downstream 267289 23375238 ~ 23375438 (+) True G170610
TU202007 lncRNA downstream 670320 23778269 ~ 23779227 (+) True G170717
TU202006 lncRNA downstream 671374 23779323 ~ 23782089 (+) True G170716
XM_026926267.2 mRNA upstream 14886 23024657 ~ 23052674 (+) True mpp5a
XM_026926270.2 mRNA upstream 16719 23024656 ~ 23050841 (+) False mpp5a
XM_034307814.1 mRNA upstream 16719 23024656 ~ 23050841 (+) False mpp5a
XM_026926268.2 mRNA upstream 16719 23024935 ~ 23050841 (+) False mpp5a
XM_026926269.2 mRNA upstream 16719 23038033 ~ 23050841 (+) False mpp5a
XM_026926847.2 mRNA downstream 320351 23428300 ~ 23495384 (+) False esrrga
XM_034308369.1 mRNA downstream 320353 23428302 ~ 23495384 (+) False esrrga
XM_026926850.2 mRNA downstream 320353 23428302 ~ 23495384 (+) False esrrga
XM_026926851.2 mRNA downstream 320353 23428302 ~ 23495384 (+) False esrrga
XM_026926848.2 mRNA downstream 320355 23428304 ~ 23495384 (+) True esrrga
XR_004578924.1 other upstream 45165 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other upstream 45165 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other upstream 176790 22862027 ~ 22890770 (+) True LOC113533992
TU200872 other upstream 1247501 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 1393099 21669907 ~ 21674461 (+) True G169577
trnah-gug_10 other downstream 854035 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 856899 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 857085 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 1318820 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 1319006 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile