RNA id: XM_026926432.2


Basic Information

Item Value
RNA id XM_026926432.2
length 2612
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC113533941
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22767942 ~ 22833992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTGCGCATGCGCGCAATTGAATCAGGCAGGGGGCGCGTATTGGGTAAACACAACGGTATAAGACAGGCGACCTCGAACTATGTCTTTTGAATGAGACATAAATTATTGTAGATTTATTCCACGAATTCGCAGTGCCCAGCCGTGGAAGCCGGAGTCTCGTCAACGGCCAAAGGAGCTACTGTTCATCACGTAGTAAAACGTTCTTCCTGTCTCCGTCTCCTCAGCTGTGGCCTCAGTTCCTGTTTCCGCCCAAATCACACAGCACATCATTGCTATAAGCATTGTAAGTAAGCAGCAACAATTAGGACTGGATTGGGGATTCTGTTCCGGATGCAACAACGTCAGGCCACCCCACAGTTAAGGCACAAGAAGAACCCCTAGAGTTGTCCCGTGATAGGATACTGAAGAGGTGTCTCCGGCAGAAGACTGGATGAGCCTAGACATGAGGAAAAGTGGAGCCAACAAGTACTGAAATTGAGTATCCTCTCTCCACATTGGGAAAATCCCTAACGTCGACTTCATGGCCTTTTGAATTGCTGTGATTGCTGTTGTCCATCTCTACTGTTGACTTGTATATTGGTGGAGTAGCAGTGGGTAGCAACAATGCACAAGAGCGCTGTgctgtgaggagagagagagagagacatgaggaCGTGGACAGGCTCCTGGCGCTGGATCATGCTAGTGCTGTTGGCATGGGGCACCTTGCTGTTCTACATTGGCGGGCATCTGGTGCGTGACAATGAACAGCCTGAGCATCCCAGCCGTGAACTCTCCAAAATCCTAGCTAAGCTCGAGAGACTCAAGCATCAGAATGAGGAGCTGCGACGCATGGCTGAGACGCTCAGGTTGCCAGAGGGTCAAGCTGATGCAGACACTGGAGCTGCAGGGAAGCTCCACAGCCTGGAAGAGCAGTTACTCAGAGCCAAAGAACAGATCAACTCTTACCGCAGTCTACCTGTTGATGgcccAGGGAGAAAACATGAGGAGTTACGGAGAATGATTGAGAATGGTGTACGAGAATTGTGGTACTTTGTGCGCAGTGAGGTGAAGAAACTGGGCCACATAGAGACAGGAGAGCTGCAGAAACACATCAACATGCTGCTGCAAGACTTGGGCCACCATCAGAGGTCCATCATGACAGACTTGTACCATCTGAGCCAGGCAGATGGAGCTGGAGCctggagagagaaggaggccAAAGACCTCTCAGATCTAGTACAAAACAGGATAACATACCTACAGAACCCACCAGACTGTGGAAAGGCACGCAAGCTGGTGTGCAACATCAATAAGGGCTGTGGTTATGGCTGCCAGCTGCATCATGTGGTCTACTGCTTCATGATCGCCTATGGCACCCAACGGACACTCATCCTGGAGTCACAAAACTGGCGCTATGCCACTGGGGGCTGGGAAACTGTCTTTAAACCTGTCAGTGATACATGTACTGACCGCACTGGAGCCTCTACTGGACACTGGTCTGgTGAAAATAATGATCAGGCTGTGCAAGTGGTTGAGTTGCCTATTGTGGATAGCCTCCATCCACGTCCTCCTTACCTGCCGCTGGCTATCCCAGAGGATCTGGCTGAACGTTTGCAGCGGCTGCATGGAGACCCCTCTGTCTGGTGGGTTTCTCAGTTCGTCAAATATCTGATCCGACCTCAGGCTTGGCTTGAGAAAGAGATTCGTGAAGCGACCACCAAGCTGGGCTTCAAACACCCCATCATAGGAGTGCATGTGCGCAGGACAGATAAGGTGGGCACAGAAGCTGCATTCCACCCCATAGAGGAGTACATGCTGCATGTAGAGGACCAGTTCCAGAGCCTGGCACGTCGCATGCACATTGAAAAGAAACGTGTTTACCTGGCCACCGATGACCCTTCACTACTGCAGGAGGCTAAGTCTAAGTACCCAGATTATGAGTTCATCAGTGATAATTCCATCTCCTGGTCAGCTGGCCTGCATAACCGCTACACTGAGAACTCATTAAGAGGAGTCATTCTTGACATCCACTTCCTGTCCCAGACCAACTTCTTGGTCTGCACCTTCTCCTCCCagGTGTGTCGTGTGGCCTACGAGATCATGCAGACGCTGCACCCAGATGCCTCATCCTACTTCTACTCACTGGATGATATCTACTACTTTGGGGGGCAGAATGCACACAATCAAGTGGCTATTTATGCACATGAGCCCCACAGCCAAGGAGAAATTGTGTTGGAGCCCGGAGATGTGATTGGAGTGGCTGGCAACCACTGGGATGGCTACTCCAAGGGCATCAACCGCAAGAGTGGTCGCACTGGCCTCTACCCCTCTTACAAAGTGAAGGAGAAAATTGAGACAGTGAAGTATCCCACTTACCACGAAGCTGACAAGCTGCTTAAGAAACAGTAGAGGGGATCAAGGGATGCTGGGAAATATATTTCATACTTTATAGTATATTGAAGAAAGCCTGGACCTCCTGGATGGGGatgcactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgaatgaatgaatgaatgaatgagtgagtgaaacagtgagtgcatgtgtgtctgaCCTTGGACCTGAAGGGGGCCATaagaattgtaaaaaaaaa

Function

GO:

id name namespace
GO:0036071 N-glycan fucosylation biological_process
GO:0033578 protein glycosylation in Golgi biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201664 lncRNA downstream 166 22765840 ~ 22767776 (-) True G170428
TU201336 lncRNA downstream 441495 22290481 ~ 22326447 (-) True G170129
TU201320 lncRNA downstream 511217 22255617 ~ 22256725 (-) True G170120
TU201208 lncRNA downstream 653192 22114395 ~ 22114750 (-) True G170020
TU201205 lncRNA downstream 656026 22111579 ~ 22111916 (-) True G170017
TU201701 lncRNA upstream 148989 22982981 ~ 22983368 (-) True G170461
TU201716 lncRNA upstream 149959 22983951 ~ 22984361 (-) True G170476
TU201718 lncRNA upstream 151091 22985083 ~ 22986622 (-) True G170478
TU201717 lncRNA upstream 152704 22986696 ~ 22991902 (-) True G170477
TU201819 lncRNA upstream 271243 23105235 ~ 23105945 (-) True G170558
XM_026926714.2 mRNA downstream 30447 22582782 ~ 22737495 (-) True LOC113534106
XM_026919087.2 mRNA downstream 419789 22285848 ~ 22348153 (-) True dync1h1
XM_026919088.2 mRNA downstream 419895 22285848 ~ 22348047 (-) False dync1h1
XM_026919100.2 mRNA downstream 493087 22261548 ~ 22274855 (-) True wdr20a
XM_026926404.2 mRNA upstream 279376 23113368 ~ 23147738 (-) False lpin1
XM_026926407.2 mRNA upstream 279376 23113368 ~ 23140179 (-) False lpin1
XM_026926408.2 mRNA upstream 279376 23113368 ~ 23140179 (-) True lpin1
XM_026926020.2 mRNA upstream 314889 23148881 ~ 23179511 (-) True greb1
XM_034307870.1 mRNA upstream 400601 23234593 ~ 23265065 (-) False spata17
TU201211 other downstream 652066 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 1950726 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 2034890 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 2202143 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 2437198 20322764 ~ 20330744 (-) True gchfr
TU201673 other upstream 21502 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 1967091 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 2424847 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 2424847 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 2744947 25578939 ~ 25582527 (-) True G171734

Expression Profile