RNA id: XM_026926481.2


Basic Information

Item Value
RNA id XM_026926481.2
length 2940
RNA type mRNA
GC content 0.51
exon number 7
gene id ston2
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27528863 ~ 27557994 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTTTGTTTGGAGCAATGTAGGAAACGGAAATGTTAGAATGACTTCCAGAAAtgtttataaacataaaaatgaagagTAAAAGTGAAGAGAGAGGAAAGTGAAAGACGACTGGACAGCGCAAAGGGACAAGGAGAAGACATTTTCGACATTTTGTGTGGTTTAAGTCTGGTCCTCACAGTGAACTGGTGCTGATGGATCTGGTGGTTCTGTAGGACCGAAGCTTGGGTCTCGGCTCGATGGCGGCGACGGACAGCAGTAATGCCGGAGCTTCCCGCTCGGGGTGGGTGGCGTTCAGCGATGAGCCGGTGCACACAGATGAGCACACTGGCATGCGAGTGACCGGTGTGCCCCAGCCTATAGCTGACTCCTCGTCCTGGGAAAACTCTGTCGCTGGCCCCGCAATGCAGCAGCGCAGTAGCTGGGTGCAATTTGATGAGAAACCCTGGACCccgtctcctcctcctcctcctcatcatcctcatcctcacccGCCATCGCAGGTAAAAGGTCtcagacacagtgtgtgttcctcagcCAGTTTCTGGAGCTCAGCTCCTGCCTCTGAGGGTGCGCCGTCTGAGGAGCTGAGTTCAGTGAGCATGGACGCCTCGTCCTGTGACCTCCCGTCTCTCAGCACTGAGGAACCTCCGAGTCACAGCACTTCCCCTCCACACTCACCCCATTCATCCATCTGCCTAGAGGATGAGGGAATAAACATGGATACACTCAACTGGACATCCAACGTCGCACAAACAAATGGCCAATCAAACACCAGCACCGGCCGCTTTTCCAGCTGGGTCacttttgatgatgatgtggaggagCAAGCCTACCAGCATGCCCCCAAACCATCCAACATTAGGATAGGCAACTTGAACAATTTTCATTTACAGGACACCAACAGCAACTTGATTGTGTCCTCCACCCAAAGCCAGagtacagacagacacattCTGGATTTAACCCCAGATAGAACGGATTCTGTGTTCGTCTTCGAAAGCCCACTGTTAAACAGCAGCACTCCTTACACCAAGAAGAATCCCTTTCTGCATGAGGATTTTTCAAACATCCAGCCCTCTCCCATTAACCCTTTCAGTGCCTATTTTAATAAGACTGCATTGACGTCATCTGACAGCCACGAAACCCAGGAGACGACACCTGCGTTTTTGTTTGATTCCCCTGTCCCTAATCCTGACACCCAAAGGGactccttccttttcttttccactGCAGGGAGTTTAGATAGTGGGAGCGGGACTGGTACTTACCCCACAGGTCTCCTTGGAGATGGCCTTGAGCagttcaaaaacatgcagatctCTGATACTGACCAAGAACCTTCTCTACCAGATGACTCTGTGGATGCAGGGGATGAGGAGGAGATTCCATATGAACCGGCTCACATGGCTCCTCAAGATGGCTGGCCCATGCTCCTGCGCATTCCCGAGAAGAAGAACATCATGTCCTCCCGACACTGGGGGCCGATCTTTGTAAGACTTACTGATGCTGGTCAGCTGAGGCTCTACTATGAGAGAGGCTTGGAGAAACACTTTAAAGAGTTCCAGCTTAGTGCCCAGCTCGAGATCTCCGAACACAAAATGCAACACTATGAAGAGAACAGCCGTGTCCATACTCTCAGCTTGGACCAGGTGGTATACAAGGAAAAGCGCAAGATCCAGCCAAAAGTCACCGTGGTTCACATACCTGTGAAGGAGCAACTGGTAAAGCTTGGGACCATGGACTACCAGGATTTTCTAAGCTTCAGATATGCTTTGCAGGAAAAGCTGGTGGTGTTGTCAGCAGATGTGGATGCCATCAACTCACCTGTGCCTTACTCCGAAGAGGAGATTCAGGTTGAAGTTGTAGATAGCTTTTATGGGGTTCTGTCCAAAGGAGACAACCGTATTTTACAACAGCTGGTAATGACGCGGATTTCCGTGCTTGCCTTTTTAATGGGCTCACCCCCCTGTCGCATAGGCCTCAACGATGTCCAAGTGAAAGGTAAAGAAGTGGTGTCCCGGCATGACATCATCCCCAACACTACCACACGCTGGATCCATCTGCGTGATTGTCGACTGCACGAGTGCGCAGACGAATCAGAGTTTACAGAGTCCAGGACCATCTCGTTTGAGCCCCCGTCTGGACGAAGATTTGAGCTTCTGCGTTTCCAGACAGCTTACGCAGAGAAGACTCTGCCCTTCACCCTGAGAACGGTCGTCAGCGTTCGAGGTGCAGAGGTGGTGCTACAGTCCTGGCTAGTGATGTCAACAGGCTTCTCATCCAATAGAGACCCTCTAACGCTGATACCGTGTGAAAACGTGGCTATCCGTTACCCCATTCCTGATACATGGGCAAAGAACTTCCGCAGGGAGAGTGTGACAGGAGAAAAATCCTTGAAAGCACGCTTTAATAAAGGAGCCAGCTTTGGTTCCACTAGCACCTCAGGGTCAGAACCAGCTATGCGGGTTACTCTGGGCACTGCAAAGTACGAACAAGCCTTCAGAGCCGTGGTGTGGAGAATCAGCCGCCTACCAGACAAAAACTCAGCGTTGGGTCACCCTCACACCTTCTTCTGCCGTTTGGAGCTGGGATCTGACTGGGAGGTGCCACACAAGTTCCAGAGCAAGTTGGAGGTGGAGTTCGACATGCCTGCTGCTTCAGCCTCGAAGACCACCATCCGCTCTCTGTCTGTCCGAGACAGGGCCGAGCTGAAGAAGTGGATCACTTACAAAGCACACTACTCCTACGAGGTGGAGATAGAGCAGAAGAACGAGGGAACGATGGAGAACCAGGAGCAGGAGGAGACAGGGCGGTGCGCTCAGCAGTGATAAGGGAACTGTCCTCTTTCACCTTCACCTGGGTTAAAAGTTGCACTTTGAATGATGGGAAACACTGAACAatgatgttaaaataaaaaggacAGCATGGGatttttgta

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204297 lncRNA downstream 37059 27465872 ~ 27491804 (-) True G172635
TU203838 lncRNA downstream 476829 26978466 ~ 27052034 (-) True G172225
TU203821 lncRNA downstream 569247 26894768 ~ 26959616 (-) True G172212
XR_004578992.1 lncRNA downstream 608326 26916818 ~ 26920537 (-) False LOC113534208
XR_003403481.2 lncRNA downstream 608326 26917086 ~ 26920537 (-) True LOC113534208
TU204334 lncRNA upstream 7311 27565305 ~ 27566560 (-) False foxn3
TU204374 lncRNA upstream 166567 27724561 ~ 27725757 (-) False efcab11
XR_004578961.1 lncRNA upstream 206611 27764605 ~ 27768101 (-) True LOC117598276
TU204484 lncRNA upstream 229328 27787322 ~ 27787728 (-) True G172782
TU204486 lncRNA upstream 275538 27833532 ~ 27834840 (-) True G172784
XM_026925974.2 mRNA downstream 39750 27482881 ~ 27489113 (-) True dio2
XM_026926575.2 mRNA downstream 524901 26998431 ~ 27003962 (-) True alkbh1
XM_034308244.1 mRNA downstream 539243 26959823 ~ 26989620 (-) True sptlc2a
XM_026926758.2 mRNA downstream 573025 26929661 ~ 26955838 (-) True ism2a
XM_026926508.2 mRNA downstream 630555 26846846 ~ 26898308 (-) True ccdc85ca
XM_026926309.2 mRNA upstream 7264 27565258 ~ 27652301 (-) True foxn3
XM_026926311.2 mRNA upstream 7264 27565258 ~ 27652296 (-) False foxn3
XM_026926310.2 mRNA upstream 7264 27565258 ~ 27630433 (-) False foxn3
XM_026926210.2 mRNA upstream 113629 27671623 ~ 27725729 (-) False efcab11
XM_026926209.2 mRNA upstream 113629 27671623 ~ 27725729 (-) True efcab11
TU203284 other downstream 1946336 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2269501 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 2269654 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2721768 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4665096 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 341497 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 341497 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 354243 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1278898 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1342910 28900904 ~ 28908552 (-) False stmn4l

Expression Profile