RNA id: XM_026926505.2


Basic Information

Item Value
RNA id XM_026926505.2
length 5570
RNA type mRNA
GC content 0.39
exon number 3
gene id fut9a
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25651808 ~ 25660655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgcgcgcaaGAGGACTACAGACGCATTTGCGACAGATAGTATACACAGTGACATGTCTGCTCATCAGGGTTCACATGTCATGCTCGGAGAGGCAGGGAAAGAGCATGGCTTGGAGATGCTGGCTCGGGGCTTGCAGTGTTAGCCCACCTTGGCTGGGTTCTCACTCGCATGCGCGTGCTGTGTGGGAGAGCTGCAGAGATGGAAATGGACggatgatgctgctgctgctgctcctttCTCTCCTCTAGGCTTTCTCTCAGCCAAACCAAGGCGATGGGACCTACACTGAGAAAACTTTCCAAGACTGGACCAAATGAAGATTCAAATGTGTTTAACTCTTCATAGCTACATTTTGCTTTGttactgttgaaaaaaaaaacaaaacaaagaattgGCCGAAGCACCTGCTTTGCAAAACCCTTTCTGAATGACTGCAAAACTACCAGGCCAGAGTATGCCATCTGCACCTACACACAGGATTCTTCGACCCCTCCTGCTTGGCACCTTCTTACTGGGCTGTTTTGTGACTCTGTTTTTGATGTACATCAAGCCGTCCACTAGCTGGTTATCGGGCCCTGTTGAATCAGAAACATCCACGGCTCGAGTAAAGAGCCTCCTGTCCAACAGAAGTGAGCAGAACCAGACCACAGTGCTCGTCTGGCTCTGGCCATTTGGGGAAACCTACGACCTGAACGTGTGCAGCTCCCTGTTCAGTATCGACAACTGTTTCATAACCGCCGACCGCAACCTTTATAACAAATCCGATGCAGTCGTCATCCACCACAGGGACATTAGCACCGATCTGTCCAACATGCCGCCAGCATATCGACCTCCTCTGCAGAAATGGATCTGGATGAACCTCGAGTCGCCATCGCATTCATCCCAGTTACCTGGCATCGAGAACCTGTTCAACCTGACCCTAAATTACCGTCAGGACGCTGATATTGAAGTGCCTTACGGCGCCATTGTCGCCTCCCAAGGCGAGGAAAGCTTTGTGCCACCGAGCAAGAGCAAGTTGATCTGCTGGATCGTGAGCAACTGGAACCCGGATCATGTCCGAGTGAAGTACTACAATGAACTGTACAAGCACGTGGAGATCCACGCCTATGGCCAAGCGTTTGGTGAGTACATATCGGACCAGGACTACTTCCCCACCATCGCCAGCTGCAAATTCTACTTGGCATTTGAGAACTCGATTCACAAGGACTACATCACGGAGAAACTGTATAACCCGCTCTCAGTTGGCACGGTGCCAGTAGTTTTGGGCCCACCGAGGGAGAATTATCAGAATTTTGTAGAAGGCGATGCTTTCATCCATGTGGACGACTTCTCCTCCCCAAAAGAGCTGGCTGATTATCTTTTATTTCTGGACAAGAACGAGGAACTTTACTTGAGGTACTTTGACTGGCGTAAACACTTCAAGGTAAAGAAAGCCTATTTCTGGGCTGAACACACTTGTCTTGCGTGTGATTATATCAGAAGACACAGCGAGTACAAGGCGTTTAATAATCTCGACAAATGGTACTGGGGTTAATCTGGATatgctgattggttgattggttgGAAATGATATAAAAGGTTGATACCATATTTTCCAGGCTATAAGACACATTTTACCCCTTTAGAAGGTAAGACTAATACAACAAACTGCCATGTATGTTATAATTTTTGTATGTGCCCATTTGGGAGTCATTTGATGGTAGACCTGCCACTCCAgcttttctttaagaaaaagtTACATTCCCAGTGTTAGCTTAGAGTTAACATAACAGTGAAAATCTTTGTAAGGATGGACATAAGTCTGCTTTACACTGTGTGACTTTCATCATTGGTAGTCATGGTTGGCTGTACCAGGCTATTACCAGGCTGTtagattttaatcaaaattatCATAATTGCCTGGAGGACAAATAGGTTCAAAAACCAGATCTTTATTGATTTTCGCAAAACAAATGTATCGTTTGGTgtgattgtttaaacaaaatgGACTTTAGGGAATGTTACTTAATCCcactgcctgctgcactacacacatcagctgtgGTGTGATAATAAACAGTTACCTTACATTTAAGCATATTTTGACAAAATAAAGAGACTAGCCAGAGTCAAATAACGTTTACGTGTAATACAAGGTGGAAAAATCACAGCTCGTAGCCGAAACATTGGCCAATGACTTGCTGACATTTTGTTAAGAGTGGAAACCCAATGTGCTACCCAATGGCAACCAAACCACAGGACTAGACAGCAAATTGGAGCTTCCATCAATAAATGTATCACTGCACTGATATCACACAATCTGCCAGATTTTATTGGCATCATGTTGTAACACACTATAAACCTATAAAACCATCGTTACCGCACAGTGTAAAGCAGACTTTAGAGACATTTTTAGGCATTACAGAGGGATTAAGCTCAAGGCTAAAGCAAAACAGCTCAGATAGTGTATATAGCTGAACTAGAGCAATACAAAAACTAAACTTGTTTAATATGAGTTCCATTTCAGAGGTCATGTATTTTCATTTAAGAAAATTCAATTACATTGGTTGCTGATTTAGTTCCGCTTTCACAGTGAAGCACAAAGAATTTTAGGAACGTGTCTCATATGTAAGTGGAACTTATTGTCCGGAAAATATGGTAAATCGATACGAATGAGGATCAGCGTTATCTGCTTAGACTGCTctggtttatttttgtaaaatgaagtggatattaatttattttgatagTCATGCTGAGCACTttccatatttattaatttgaatgCAGAgaacatattttattatgtgATAACCTTTGtgactgttttgttttcttattgcCTTATTTATCATGTTTCACATTTGTCGATGGTGATTTTAAATTGTCATTCCACGTTCACATCCGACTGACTAAACCATAAATTACTCCAACTGAGAAAATAAGTGTTGAATAGGAAATAgctgtgtattatttatttcactacGATATAGTGTAGGTGTGGTGTTTGTCAAGTATGCAGTGTTTACAGATCTGTGAATTGTGTATGTGTTGTCCATTGCTGTAATTAGTGTAGTgtctagaattttttttggtcataatTTTCTTTGGATCTTACTTGCACAGTCACGAAAGGCCAATGACCTTGCTAAAGCATCAGCGCACtgttattactttttaatcAGCCACAACGTGCGCTTTCATCAACAGCTCAAACTCAAATGCTACTGTATAGTGTTATATCAATATACGTCGTAACAAACAACACGTCatcatacatcagaaatgtcatcttttgaaattttttaaaattaggaGTGTATGGAGAGTTGACAATGtgaacagttttactgtaatacTACATACTAGGGCTGCGTCGATACTGATTCTGACATTTCTGATACTAATACATCCGATACCAGGTGATGCTAAGTGACTTAAGCCTAGTGCATGTGGTTGCGCTAAACAACAAGCAATAGATCACAATTAATGATCAAAGCAAAagaaagcagactgcaaactgtgctctgtgaaaatatcaagaggagaaactacagcatcttcctacaatacaagtaaccttataaaacatcttaaacataaaaataagcacaaggagttcattgctagcagcacagAGCAACACCCAACACTGCAGCAAATGGTAGCTAGGGcaagaaaaaatgtctacataaaaaaaaaaaaaactaaaacaacaaATCATACATTATTTACAGCTGCACGGCTTTTTCCGAAGTGAAACAAACCCCGCTGTTCTTCATTGCAACCCTACTCGAGCTAAAGttactaatgtagctagctaattcactTAAAATCAGCGAGCTAACATCATATAGTGCAAGTGTAGCAGCTTAAGTGCATGAATATGCACATTATCATGGTGTATATGTAAACCAGGGAAACAAAAACAGTGCTAAATAACATGTCCTGTGATGTCCCTGATTGGTTAATGCTAAGTATTCATCTTCGTATGATTTactcatttctttaaaaattccCTCCGGCTGCACCAGTTGGAAAGCAGTGGTTTATTGCTTTTAAGTTATATGTCAGTGATTGTTTAAAAGGAAAGAACAAAGGGAAGTCCTACTTCGGAGAAGTCAGGTTTATGATATCCGGATATAACTTCAATTTTCCAAACAGGACAACATCCATCtaaaagtgacatttttgttCATCGTTAATTATAATTTGAGTACATGTATGGCAGATGGCTGTTCATATTTCCTGTGGACTCTGTGCCCCTTGGTCGTGCATGTCCTCATAAATTAACACTACGTCTAAATATCAACATAATTATTTCTTTCCATTctggtgtgtgtgaacattCTGTCCACTCCGTGAAACCCACAGTACACCAAAAATCTGAATTGTGTTGATGCCGAAAAATATAGATCGCCTCTTCAATCAGaacaaaatgcaattatttCTTGAGCGTCTAGATCAATGCACACTGtgcacacatttgtttttcttttaaaagcttagatacattttaataaatcaataaatcgtTCACCTCAAAGAACATTAGAAAATGGCGAACGTCTGCGAAATTGGTGTATTGGCCTTATTGTAAGGCGTGGCTAATATTCATACATTTCAGTTACATAATTCTGTATTTTCTCTAATAAAAGTGAAGTACTATATTGTTACTTAGCCTACTAGCCTACTACTGCAAAATTCAGCAACGGCTAAATTCAGTGAAAGAAACAGTTGCCAAATTGTATGCACTGGTATAGCATAATatttttgtagcattttaaattttttttttttttaaggttttccAATCACACCATTCCATTATCACACTCCTGATTTAAATgctgtgctattttttttttgtctagcagtgtgaaaaatatgaaatgaagaGCACAAGTCCATTATGCAAATGTAGGCATGTGTGTGGGACtgcacaccactcacacacatttgtaaGAGCTTATGATATGAGGTCTTGTTTTTTGGGGGACATTAATGAGAAAGTCCATGGACTTTTATTGTAGATATTGTTCTTATGAAGAGAGAAATGTAGCTCTCTACTACTCTATTCATAAACACTAGCTTAGCAAATGTGTTCAGTGCCAAAGCTTTTCCCttgattgtttttctctgaTCTACTTTTACTGTGAAAGGCTATTTTTGGATTAGTGTAATCTAACAAGTACTGTATGAtacatttacaaagaaatatcATATGGATGCACGCACATTACTAAAGCGCTGTGCTTTGTGTTCTAATTTTAGTTCACTGCGAATGGGAGATTCCACGATTGCGCTGGCATTTAGCCCTTTTCAACATTGGAACTaacaaaacatgcatttaatcattcaaaaaGATGTGTCAGCCCATCTCAGGCAACTATCCTGCTGcgtttttgctcatttttaatcataaaattgGCAAAATGACACAGTGTGTTGAACTAGCATCCATGAATGTTAAAGACTTTCTAGTgatttgcttaatttttttaaattaataatttaatttgtctCTAATCTGGGTAACAGGATTGTACAATTCAAAGAAACCGCaccagtcaatatcacaatattgtc

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG:

id description
K03663 FUT9; 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203274 lncRNA downstream 142188 25504388 ~ 25509620 (-) True G171726
TU203256 lncRNA downstream 181734 25469504 ~ 25470074 (-) True G171710
TU203103 lncRNA downstream 261937 25389583 ~ 25389871 (-) True G171594
TU203079 lncRNA downstream 359870 25291426 ~ 25291938 (-) True G171573
TU203076 lncRNA downstream 362306 25287152 ~ 25289502 (-) True G171570
TU203311 lncRNA upstream 112849 25773504 ~ 25778966 (-) True G171755
TU203430 lncRNA upstream 317141 25977796 ~ 25978027 (-) True G171864
TU203440 lncRNA upstream 397590 26058245 ~ 26058509 (-) True G171874
TU203600 lncRNA upstream 934626 26595281 ~ 26595483 (-) True G172016
TU203802 lncRNA upstream 1111477 26772132 ~ 26773050 (-) True G172196
XM_026926059.2 mRNA downstream 11587 25634727 ~ 25640221 (-) True fhl5
XM_026926867.2 mRNA downstream 17925 25620016 ~ 25633883 (-) True si:ch211-266g18.9
XM_026926529.2 mRNA downstream 59065 25587488 ~ 25592743 (-) True col10a1a
XM_026926010.2 mRNA downstream 77687 25557409 ~ 25574121 (-) True fyna
XM_034307899.1 mRNA downstream 96245 25534732 ~ 25555563 (-) True LOC113534087
XM_034308356.1 mRNA upstream 3683 25664338 ~ 25669975 (-) True manea
XM_026926682.2 mRNA upstream 18659 25679314 ~ 25680741 (-) True cx52.7
XM_034308237.1 mRNA upstream 652154 26312809 ~ 26321625 (-) True LOC113534079
XM_034308046.1 mRNA upstream 702411 26363066 ~ 26403989 (-) True si:dkey-288a3.2
XM_026926840.2 mRNA upstream 1080719 26741374 ~ 26794919 (-) False bcl11ba
TU203284 other downstream 69281 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 392446 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 392599 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 844713 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2788041 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 2238836 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2238836 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2251582 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3176237 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 3240249 28900904 ~ 28908552 (-) False stmn4l

Expression Profile