RNA id: XM_026926508.2


Basic Information

Item Value
RNA id XM_026926508.2
length 5637
RNA type mRNA
GC content 0.42
exon number 7
gene id ccdc85ca
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26846846 ~ 26898308 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCTGCTTCAGCAGGCTCGCTAAGTGCTGAGAGGCAGTCTCTCTACCTGCTCGCGCggtggtgtgtgtatgcgtgtgtatgcgtgtgtgtgtgtgtgtataaaccgCTCTCTACACgtttctctgttttttaaaGCTTCAGTCACACAtctggaggaagagaggaaatgTGGAAGAGACCCCTGTTTCAGAAAACGGTTATGCATGACCAGAAAGTCTAATTTCACCTCACCGGACTGAAGAGCTGACCTTCCAGGACGAAGGATTTCAGAGATAAAAAAGCAGGAGTTATCAGTGTTATTTCGCTTAACAGGTTTCCCACTTCTTGGATTAATCTTCAATACCATGGGTGTGATTTTAGATCTGCTGCATTTATGTAGGCATCATTAGATATCCTTCAGCTTCTTCTCACAGCCGTCCATCCACGGAAAGGAATATGGCAAAAAATGTGACCGACGTCCCAAGGGAGGATTTAAGCAAAATCTCAGACGAGGAACTCCTCAAACTCAGCAAAGATGAGCTGGTTCGAAAGCTCCGTAGAGTCGACAGCGAAAAGATCAGCCTAATGGTGGAGCACGGGAACATGATGCGAGATGTGAACCGGAGACTACAGGTTCACCTTCACGAGATCCGGAATCTGAAAGAAGTGAACCAGAAGCTGCAGGACGACAACCAGGAGCTCAGGGAGCTGTGCTGCTTTCTGGACGACGACCGGCAAAAGGGCAAAAAGCTGTCGCGGGAGTGGCAGCGCTTCGGCAGGTACACGGCCAGCGTCGTCTGGAAGGAGGTCGGATTCTATCAGCAGAaactgaaggagctggaggTCAATCAGGAGGCCATCATGCACGAGAACGTGGAGTTAAAGGAGATCATCGTCAtgctggaggaggagaggaatgGCGCCGGGTCGAGGAGCTCTATAGACAGCCAGTCCAGCTTGACCAACCTGAATGGAGGCACGAATAACGTGAGGGACGTGGGGGATGGAAGCAGTACGTCCAGTACGGGAAGCGCTGGAAGCCCAGACCACCATCACGGTCACGGGCACAAACCTGTCGAGGGCAAGGTGGCAGCCATCAGAAGATCTATGGATGATCTATCGACTAACCACCTCCACAGGAGCATACCAAATGGACTGAACGAATCCTCGAATTACATCCGTCAGCTAGAGACGAAAGTCCGGATTTTAGAGGATGATAACAAGCAGGTTTTCTCCCAGggGAATGTTGGTGATTTGAAGACGTTGAAGAAAGGCTTGTCGTTGTATCACTCCGAGTCCCAGCTCTCTGCGCTTTCCAAGCAGCAAGACGCCTTACAGAACGGCACTGCTCGACTCCCGGGTGGAGATCTGCCCTCGCCCATCACCCCCTACATGACGTCCTCTCAGAAACCCGAAGCTCTGGTTCATGCCATGAAGGTATTGGAGGTCCACGAGAACCTGGATAGACAGATTCCTGAGGACTACGAGGAGGATctcagtgagaaagagaaagctaTCGTGAGGGAAATGTGTAATGTGGTGTGGCGTAAGCTCGGTGATGCAGCAGGCTCCAAGCCGTCCATCCGGCAGCATCTCTCTGGAAACCAGTTTAAAGCCCCGATGTAGCTCCAGCCTCGATCAGCACACACCAACACGCCAGTCCGTCCAGAACCAGCGCAATTTCAGAGCACTTCAGAAAGCAATCAGAGTACAAACCTGCACTCCTATGGCTCCATGCCGGCAGCCATGTTTTAGCGTACATTAGGGTCCATGCAGTCAGCACAAGCTGACTTTACacgctgattttttttttgtccactcATCTAAACAGGATTTAAGGCAGCTAGTGGTATCCATTACCTAATGGACGTTGAGACTGGTTTTAGTTAGAAATCCTGACTTTACACTCCACCAGCAATGGAGCTGGTTCACTCAGTCGTAAATGATCCTAAAGCATTAAGACCTACTTCAGGAGAATAAACCATCATGAAGGACGGATGCGAAACGAGATGTAGCAATCTACCCTCTGTTCCTCCTTTCTCTAGAGAGGTTTACACAAGTACACGCCAGGATTGCTTCACTCCTTTTCGTCTGCttccatttttatgtattttcccAAGATATAAACACTTGGTGTTAGAAAGAAACCAGTCAGTGTTTTCTTAACCCAAATAGACGTCCAGCATATGAAAAACAGCCCTCTTTGGCTGTTGAGGACAAATTATGGGCGATTATTTTCATTAGGACGAACTCCATCTCAGTGTCATACAGTGTCTCACTTTTAAGGCATTTTATTTTAGACCAATTTGACAATCGTTTGTAAATGATAAACTATTAAAATCCTAAAGCTATATGATCTTATGCAGTTAGTCCCTTTAACACCGGGTAAGGTAGCTTAGCATTGGCTAATTATGTGGTCTTGAGTAAAAGCACTCCTGTACTAATGAAGCTTTAGATCCAGCACAGACGTCTGAACCGGGGTTTGTTACTGAATTCTGTCTCAGCAAAACAGTACGAAGTCTTAATGTTGTCTGAAAACACGTAGCTGAGTTGTTTACGTTGTGAGACTAGCCGTACgttcacactaacaaacaacaaaacgaCAAAGAAACCGTTCATTTTTGATCAAGCGACATTTGCATTGAGATTTTATCAATTCTATACAAAGTAAGTATGACGTGGTTatgtgacaaatccaaacgattggtTCAAATGATTCCTCATCCTTGTGGTGTAACGTTTCTTAAAACTTATAAACGCTATATCCTGAACTCTAATTAAATGTTTAGagagacattacgaagaaacataaagcttggaaggaagtagcagaaaACGTTGGTGTCTCTGATGAGTACGTAGCTAGCACTGAATACACAGCTAGTTCGAGCCCAGACACGTAGCGTAAATCAAGTAACcagttttcacactgattaatgtgttatttcatttgtgttaatcaggttagctttagaagctaaatatagctactactgtttctcattggaactaaaacaaacaaactcaaaaAAGAGGCAatgcccacaagagacaaactacaagcgacacACAGTACTAGTGTGAACGTAAGGTTAGGACTGGTTTATGAGATCTCTAGACAAACGTTCTGTCGTACATGTACATGAGATTCAGCAGAGTCAGGTATGAAGTTTTGTGTAGATGAGGAAATTTGTGCTGTTTAAAGGTGCGGTTTGTAATTTGCTAGAGTTTCTATTATATGTAATCATATTTCAACGATATGAAAACTGtgtttgaaatatgaaaatattgatTCGCATTGgatctctttgtttttttttttatttcaggttttaatttacacttttctggccctgaaatagGCTCCGCCCCAAGTGGAACGGAGCTACTCAGGCCAGATTATGCCCATTTTCTGTAAAAAGGAAACTATTGATGTATTTGTTGTTTTACCCAAGCAGGTGTGTTGATTGTAAAGTTTTGATTGCAGagctctaaaaatgacaaactgcacctttaacatCTTCACTGCGTATGGAAGACTCGGTACTGCCACAAAAGATATTTGCTGCATTTGTGCAAAGCTCTAACCAGAATGTTTAAAGTCTCAATGATGTAACTGTAAAGTCTCAATGATATTTTTCCTTGCTCTGATTTTTCAAGATTTTTCTCTCGCAGAAGATAACGAGTAACGTGTGAGGATTTCACTTCCGGCAGCTCAGGGACTTTTGCTCATTGCCGTCGTCATGACAAGAACGAGTGCGGGGACAGTGAAGAGAACGTCTCATAGTCACATGACTAACCTTAATTCCATCAGAACGTCAGATCTTTCtgaatatttgtgtatttttttacacaaatatgGAGAAATGTGAATGTAGCATAGCGCTGTGttacaaatatgaacaaaacacCAATATATATCATTAGCATCAGCCTTCAGAGAGGAGGTTTTCTACTTAAAGCTTTAAACGACTGGCTGTAAATTTAGAAAAGTATACATTgggtataaataaaatcaaatctagAGTGTGCCTCATGAATAAGTCCTTCAATACACAGATGTAGACaccaagtaaggaataaaacacttcggggcatgctgttataggaaaataatcaactttcagGTGATGTAATGTGGCTACTACCCTGAagttattttcctacaacagcatgcctTGAAGTGTACAGAAATgtacaacttttatttattaaagaactacatgttgtactttttatccgtttatcgttacatttaatattttgggaaaaattAGCTCcggttctcacttacattatagcagctataaacagtcccttcaccagcctctttttttccactaagacaaaaaaaagcagcttgtcatgttctcGAGAAACCAGAGCTCCTCCGTCCTGAAAAcctactgacactggagactccttcctcgaatgttaaacaaacatctccttacagaatcatatcaatgattacatatttttaagtcttttttttttttttgccagtttaTGCACAGCGTCCACGATGCAAGTCCCTtcgtaagctgttactatagaaaccataacgcatcaacaccttctaaccaatcagaatccagaatttatcAGCGCCTTGGGTTTATCGTTATCTGTAGCATGATGAGTgactgaaataaattaaaacagctTTTGGCTGGCAGTGTAGCGTCCAAAATATCCCAGAATTCTGTGTTTGGAGCCCCGAAGGAAAGAGTTTGACGTGAATGAGTCGGACGTTTCTGGAACATCAGCAGCTCTCTGgctcacaaacaaacacacacacacacacacagtaagagcACATGAGCAAGGAGGAAAGGAAGCATGAGCAAAGTTCTTAATTGAAGTACAATAATTCGAGAAGccataataatttttttgtatttttaattacttcAGAGAGAAAAGGTTTTGCAAAGTCAGAAATTTCAGATTCTCCTTGTTGTAAAAGCACTTTATCGGTGCTGCTCTGATATAAAGTCAGatgaattttgttggtttctTCTTGAGCCAAGATGCAGCAGGTGGCTTTTGGCAgtcttgtgtgagtgtgtgttttaattttttttttttttttatgtctggGATGTGACTGAACAAAAACGAGCAGCAATCatttgaaagattaaaaaaaaatagtttctaTTTTGATATTTCtatgaaaaatgaaaggatGCTCTAAAAGATGAGCGGTCAACATTTGAACTATTTTTTGGGGGGGAGGAAAAAGTGTCCTTCCTGTCCAAGTAGTCTAAACTactgactcttttttttaatatttgttaatttgaaaacacaaaagaaaaaaaaaatccatgaatCCCAGACTGCTATTTTCCTAACCTTGCTTTCAAATGCACTGCTTCGTTTGTGAGCGAGgaggtgatgtgatgatgtgaagaTCTCTAACTCGAGTCTGTGTTTGTGCCACCTGAGCAAACTGTTGTAGGAGATCTCGCTGTGTAAATACCTCTTTCCTGTAGAATATCTGTAACTAGCAtgcctttattattattattataattttttttcataagaacTGTGCTGTAGGTTTCATTTAGGAAATGAAAAGCCGTCGAGATGAAACTCAGTGCACTTCCTGTAGatgattgaaaataaaatgtacactctTTGTAAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203813 lncRNA downstream 17117 26829318 ~ 26829729 (-) True G172207
TU203802 lncRNA downstream 73796 26772132 ~ 26773050 (-) True G172196
TU203600 lncRNA downstream 251363 26595281 ~ 26595483 (-) True G172016
TU203440 lncRNA downstream 788337 26058245 ~ 26058509 (-) True G171874
TU203430 lncRNA downstream 868819 25977796 ~ 25978027 (-) True G171864
XR_004578992.1 lncRNA upstream 18510 26916818 ~ 26920537 (-) False LOC113534208
XR_003403481.2 lncRNA upstream 18778 26917086 ~ 26920537 (-) True LOC113534208
TU203838 lncRNA upstream 80158 26978466 ~ 27052034 (-) True G172225
TU204297 lncRNA upstream 567564 27465872 ~ 27491804 (-) True G172635
TU204334 lncRNA upstream 666997 27565305 ~ 27566560 (-) False foxn3
XM_034308270.1 mRNA downstream 1711 26818900 ~ 26845135 (-) False setd3
XM_034308271.1 mRNA downstream 1851 26818900 ~ 26844995 (-) True setd3
XM_026926840.2 mRNA downstream 51927 26741374 ~ 26794919 (-) False bcl11ba
XM_026926839.2 mRNA downstream 51927 26741374 ~ 26794919 (-) True bcl11ba
XM_034308046.1 mRNA downstream 442857 26363066 ~ 26403989 (-) True si:dkey-288a3.2
XM_026926758.2 mRNA upstream 31353 26929661 ~ 26955838 (-) True ism2a
XM_034308244.1 mRNA upstream 61515 26959823 ~ 26989620 (-) True sptlc2a
XM_026926575.2 mRNA upstream 100123 26998431 ~ 27003962 (-) True alkbh1
XM_026925974.2 mRNA upstream 584573 27482881 ~ 27489113 (-) True dio2
XM_026926481.2 mRNA upstream 630555 27528863 ~ 27557994 (-) False ston2
TU203284 other downstream 1264319 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 1587484 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 1587637 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2039751 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 3983079 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 1001183 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 1001183 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 1013929 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1938584 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 2002596 28900904 ~ 28908552 (-) False stmn4l

Expression Profile