RNA id: XM_034308243.1


Basic Information

Item Value
RNA id XM_034308243.1
length 4453
RNA type mRNA
GC content 0.47
exon number 35
gene id xdh
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24252861 ~ 24282623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTAAGTAGCTCCATGTGCTGAAGTCTCCTCTCTCCGGCTTATCAGCAGCTGCTGAAGACAAACCTGCACTATGGAGGAAATAAGCAAAACACACCTGGAAGACTTGGTGCTCTTTGTAAATGGCAAAAAGGGACTAAGCTGGGATGTGCTGAAGGTGGATGTGGCGCCTGCACTGTGATGGTGTCCAAGTTCCACCCACAACAGAACAAGATTGTTCACCAGGCCATTAATGCATGTCTGGCACCGCTATGCTCAATGCATCTCTGTGCAGTCACTACAGTGGAGGGAATCGGCAGTGTAGCCAGCAAACTTCATCCTGTTCAGGAACGGATTGCTAAGGCTCATGGATCACAGTGCGGTTTCTGCACTCCAGGACTTGTCATGTCCATGTATGCCCTTCTGAGGAACAACCCCCAGCCTGCAATGCAGGAAATCGAGGAGGCCTTTCAAGGTAATCTGTGCCGTTGCACTGGGTATAGACCTATACTGGAGGGCTACAAGACCTTCACCAAGGACGGAGGATGCTGTGGGGCGAAAGGAAAATCCAAAGCCTGCTGCTTGACCAGTGAAGACACAAAAGTGCAGGACAATGGAGATTCAAAACATTCAGTTCAACAACTGTTTGACCCATCGGAATTTATGCCGCTGGACCCAACACAGGAAATCATTTTCCCTCCAGAACTGATGGGTCTTTCCAAGCATCCACCACGACAGCTGAGATTTCTTGGAGAAAGAGTTTTATGGATTCAGCCCAGCACCCTGAAAGAACTCCTGGAGCTAAAGGCATTGTATCCTACGGCCAAATTGGTGGTGGGGAACACTGAAGTCGGTATCGAGATGAAATTCAAGAACTTCCTGTACCCTGTAATCTTGGCACCAACATACATCCAGGAACTCAACAGCATCCAGTACACTGAGACTGgGATCGAGTTTGGTGCATCTGTGACATTGACTGTGTTAAAGGAGGTGCTGAGCAGAATGGTAAACAAGCTACCAAGCTACAAAACGGAGGTTTTCCAGGCCGTACTCGAGCAGCTTCACTGGTTCGCAGGACAACAGATTCGAAATGTTGCAGCTATTGGTGGAAATATTATGACAGCAAGTCCTATCTCAGACCTTAACCCTGTGTTCATGGCCGTGGGTTCTAAGCTAACTCTGATGTCCAAAGAAGGCAAACGTGTGCTTCAGATGGATGACAAGTTTTTCACTGGCTAcaggaaaactgctttaaaacCAGAGGAAATTCTGTTGTCCATTGAGATTCCATACACAAAAAAGGGCCAGTACTGCTCAGCCTTTAAGCAGTCACTTCGCAAAGAGGATGATATTGCCATTGTCACCTGTGGGATGAACGTGCTCTTCAAGGAGGGGTCTAACATAGTGCAGGACATCCGACTCAGTTATGGCGGAATGGCCCCTACCACCGTTCTCGCCACAACAACATGCAACCGACTTATTGGCAGGCAATGGAATGAGGAGCTGATGCAGGATGCCTGCTCTTTCTTGGCTGAAGAGATGACCCTGTCTCCCTCCGCACCAGGTGGGATGGTGACATATAGACGCACACTGACCATCAGCCTGTTCTTCAAATTCTACCTCACTGTCCAGCACAAACTAGCTCAGGAGTACCTCTCTGTTGAGGATGTCAGACCAGACTATGCCAGTGCTATCGAAATCTGTCACCTGGACTCACCAAACAGTGTGCAGCTGTACCAGGTAGTCCCTCCAGGTCAGAGCCCAGATGATGTGGTAGGTCGTCCTGTTATGCACCTGTCTGCTCTGAAGCAGGCCACAGGAGAGGCTGTGTACTGTGATGATATTCCTCACTTTGAGAACGAGCTCTGTTTGGCCCTCGTCACCAGCACTAAAGCTCATGCGTATATTAAATCTATTGATATTAATGATGCCATGGCAGTTCCAGGAGTGGTTACATTTGTCTCTGCCAAGGACATCCCTGGCAGCAATAAGACTGGACCTGCTGTCTATGACGAGACCGTCTTCGCTGATGACAAGGTCACATGTGTAGGTCACATAGTGGGAGCCATTGTAGCAGACACACAAGTCCATGCACAAAGGGCAGCCAAAGCTGTAAGGATCTCATATGAGGAATGTCAACCTGTGATTGTCACCATTCAGGATGCCATTGCCAATCAGTCATTCTACCAGCCAGTGCGAACTATAGAGAGAGGAGATCTTGTGCAGGGCTTTCAAGAGTCGGATCACATCGTACAAGGTGAAATACACATAGGGGGACAGGAACATTTTTACTTGGAGACAAACTGCACACTGGCTGTCCCTCGAGGAGAGGATGGTGAAATGGAGCTGTTTGTGTCCACGCAGGCAGCCACCAAAACACAAACACTTGTGGCCAAAGCATTAGGAGTACCAGCCAGTCATATCGTGTGTCGAGTTAAGAGAATGGGAGGAGGATTTGGAGGAAAAGAGAGCCGCAGCACCATGCTCTCAACAGCTGTGGCCGTTGCTGCTcataaAGTCAAGAGACCAGTCCGTTGCATGTTGGACCGCGACGAGGACATGCTGGTTACTGGAGGTCGGCACCCATTCTTTGGACATTACAAGGTTGGATTCAAGAAGAATGGAAAAGTCATGGCTCTTGATGTGACCTACTACAGCAACGCAGGAAATTCCATGGATCTTTCCTTATCTATTATGGAACGAGCACTCTTCCATATGGACAACTGCTATAACATCCCTCACATTCGTGGGACTGGCTACATTTGTAAAACCAATCTGCCTTCCAACACTGCATTTCGGGGCTTTGGTGGGCCTCAGGGAATGATGGTAGCAGAGAGTTGGATAAGTGATGTGGCTCTGTGTTGTGGCCTCCCTGCTGAACAGGTGAGGAAGATGAATCTGTATAAGCAGGGAGACTACACCCCCTTTAACCAGTGTCTGGACCAGTTTACCATACATCACTGCTGGGAGGAGTGCATATCCATCTCAAACTTCCACCAATGGAAAGCCAAGGTGGAGCAGTATAACAAACAGAATCGCTGGACCAAAAGAGGGTTGTGCATCATTCCCACAAAGTTTGGCATCAGCTTCACTGCAGTCTTCCTCAaccaggCAGGAGCACTGGTTCATATCTATACAGATGGCTCAGTCCTTCTCACCCATGGTGGAACAGAAATGGGACAAGGCCTGCACACTAAAATGGTCCAGGTTGCCAGCCGAACTCTGGGAATCCCCAGCACAAAGATTCACATCAGTGAGACCAGCACTAACACAGTCCCAAACACAAGCCCTACTGCCGCATCTGCCTCCTCCGACCTCAATGGCATGGCAGTCTATAATGCATGCCAGAAGCTACTGCAGAGACTGGAGCCATACAAAGCCAAAAACCCAAAGGGCAGCTGGGAGGACTGGgTGAAAGCAGCTTACTTTGACCGGGTGAACTTATCAGCCAATGGGTTTTATAAGACTCCAGATATTGGCTATGATTTTGAAACAAATTCTGGCCGACCATTTAACTACTTCACTTATGGTGTAGCAGTCTCAGTAGTGGAGGTAGACTGTCTGACTGGCAATCACAAGAACCTGCATACTTCAATTGTTATGGATGTGGGCAAAAGCCTGAACCCAGCACTGGACATCGGTCAGGTGGAGGGTGCATTCATGCAGGGCGTGGGTCTTTTCACACTTGAGGAGTTGCGCTACTCTCCCCAAGGTTACCTGTACACTCGTGGACCTGGGATGTATAAGATTCCTGCTTTTGGAGACATTCCAACTGAATTTAAGGTCTCACTACTTAGAGATGCCCCCAACGAGAAGGCCATCTTCTCCTCCAAGGCGGTTGGAGAGCCTCCCCTCTTCCTGGCAGCCTCAGTCTTCTATGCTATCAAAGATGCTATCACAGCTGCCAGGGCCGAGTCTGGCCTTACAGGACCATTTAGACTGGACAGCCCTGCTACACCTGAGAGAATACGCAACGCTTGTGAGGACAGATTCACCAAACTAtgtCCTCCTTCGGAGTTGGGAACTTATACACCATGGGATGTGAGGGTGTAAGACACAGAAGTCCTAAACATGTGCCACTTCCTGCTGTCTCACTATTTTACACTCACTGCTACTCACTGGTTATATCTGAATGCAAAAACTCTTGTACAATGACTGACAATAAAAAATGGTTACAATATGCCACAAAACTGTAGGAAATTGTGTACTGAGTAATTGATGGATTTACTTCTGTCTACATACTGTattgtttaactgtttaaattgcaccatatttaaataatctgttatttcataatttaaatgtgtatgCTTATAATATATAGCTTGATTTACCAAACCTCCCAGTGACACTAATccttaattttataataaaaatcaagattattatatactatacatacaAGTCTACAAGCCCTTGAAGTAATTGTCTAAATTTGAGCATCCTATAGGAATAAAGgctttttttaaccatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202251 lncRNA upstream 216749 24035784 ~ 24036171 (+) True G170904
XR_004578986.1 lncRNA upstream 218858 24028325 ~ 24034062 (+) True LOC117598313
TU202239 lncRNA upstream 241571 24010349 ~ 24011349 (+) True G170893
TU202008 lncRNA upstream 423734 23827063 ~ 23829186 (+) True G170718
TU202006 lncRNA upstream 470831 23779323 ~ 23782089 (+) True G170716
TU202374 lncRNA downstream 25231 24307854 ~ 24308329 (+) True G171017
TU202376 lncRNA downstream 27007 24309630 ~ 24309966 (+) True G171019
TU202378 lncRNA downstream 34911 24317534 ~ 24318066 (+) True G171021
TU202527 lncRNA downstream 162980 24445603 ~ 24450067 (+) True G171135
TU202508 lncRNA downstream 197278 24479901 ~ 24482854 (+) False kdm1a
XM_026925957.2 mRNA upstream 6030 24238657 ~ 24246890 (+) False dnajc27
XM_026925956.2 mRNA upstream 6030 24238670 ~ 24246890 (+) True dnajc27
XM_026926612.2 mRNA upstream 17795 24233358 ~ 24235125 (+) True pomca
XM_026926430.2 mRNA upstream 254878 23988758 ~ 23998042 (+) True ctsba
XM_026926208.2 mRNA upstream 270285 23979390 ~ 23982635 (+) True LOC113533835
XM_026926836.2 mRNA downstream 12983 24295606 ~ 24307018 (+) True zgc:162964
XM_034308330.1 mRNA downstream 12983 24295606 ~ 24307018 (+) False zgc:162964
XM_026926837.2 mRNA downstream 12984 24295607 ~ 24307018 (+) False zgc:162964
XM_026926574.2 mRNA downstream 50902 24333525 ~ 24346184 (+) False LOC113534014
XM_026926573.2 mRNA downstream 50932 24333555 ~ 24346184 (+) True LOC113534014
trnay-aua other upstream 287814 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_11 other upstream 288001 23964848 ~ 23964919 (+) True trnah-gug_11
trnah-gug_10 other upstream 290865 23961984 ~ 23962055 (+) True trnah-gug_10
XR_004578925.1 other upstream 1230525 22861810 ~ 23022395 (+) False LOC113533992
trnah-gug_12 other downstream 144146 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 144332 24426955 ~ 24427027 (+) True trnar-acg_2
trnae-uuc_2 other downstream 145557 24428180 ~ 24428251 (+) True trnae-uuc_2
trnah-gug_13 other downstream 146781 24429404 ~ 24429475 (+) True trnah-gug_13
trnar-acg_3 other downstream 146967 24429590 ~ 24429662 (+) True trnar-acg_3

Expression Profile