Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026926575.2 |
| length | 1253 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 6 |
| gene id | alkbh1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 26998431 ~ 27003962 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | molecular_function |
| id | description |
|---|---|
| K10765 | ALKBH1; alkylated DNA repair protein alkB homolog 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU203821 | lncRNA | downstream | 38815 | 26894768 ~ 26959616 (-) | True | G172212 |
| XR_004578992.1 | lncRNA | downstream | 77894 | 26916818 ~ 26920537 (-) | False | LOC113534208 |
| XR_003403481.2 | lncRNA | downstream | 77894 | 26917086 ~ 26920537 (-) | True | LOC113534208 |
| TU203819 | lncRNA | downstream | 127812 | 26870347 ~ 26870619 (-) | True | G172211 |
| TU203813 | lncRNA | downstream | 168702 | 26829318 ~ 26829729 (-) | True | G172207 |
| TU204297 | lncRNA | upstream | 461910 | 27465872 ~ 27491804 (-) | True | G172635 |
| TU204334 | lncRNA | upstream | 561343 | 27565305 ~ 27566560 (-) | False | foxn3 |
| TU204374 | lncRNA | upstream | 720599 | 27724561 ~ 27725757 (-) | False | efcab11 |
| XR_004578961.1 | lncRNA | upstream | 760643 | 27764605 ~ 27768101 (-) | True | LOC117598276 |
| TU204484 | lncRNA | upstream | 783360 | 27787322 ~ 27787728 (-) | True | G172782 |
| XM_034308244.1 | mRNA | downstream | 8811 | 26959823 ~ 26989620 (-) | True | sptlc2a |
| XM_026926758.2 | mRNA | downstream | 42593 | 26929661 ~ 26955838 (-) | True | ism2a |
| XM_026926508.2 | mRNA | downstream | 100123 | 26846846 ~ 26898308 (-) | True | ccdc85ca |
| XM_034308270.1 | mRNA | downstream | 153296 | 26818900 ~ 26845135 (-) | False | setd3 |
| XM_034308271.1 | mRNA | downstream | 153436 | 26818900 ~ 26844995 (-) | True | setd3 |
| XM_026925974.2 | mRNA | upstream | 478919 | 27482881 ~ 27489113 (-) | True | dio2 |
| XM_026926481.2 | mRNA | upstream | 524901 | 27528863 ~ 27557994 (-) | False | ston2 |
| XM_026926482.2 | mRNA | upstream | 524901 | 27528863 ~ 27557005 (-) | False | ston2 |
| XM_026926479.2 | mRNA | upstream | 524901 | 27528863 ~ 27553284 (-) | False | ston2 |
| XM_026926480.2 | mRNA | upstream | 524901 | 27528863 ~ 27553284 (-) | True | ston2 |
| TU203284 | other | downstream | 1415904 | 25578939 ~ 25582527 (-) | True | G171734 |
| TU203074 | other | downstream | 1739069 | 25258839 ~ 25259362 (-) | True | G171569 |
| TU203072 | other | downstream | 1739222 | 25258839 ~ 25259209 (-) | False | G171569 |
| TU202681 | other | downstream | 2191336 | 24801083 ~ 24807095 (-) | False | G171256 |
| TU201673 | other | downstream | 4134664 | 22855494 ~ 22863767 (-) | True | G170435 |
| TU204658 | other | upstream | 895529 | 27899491 ~ 27910890 (-) | True | si:ch73-204p21.2 |
| TU204659 | other | upstream | 895529 | 27899491 ~ 27910890 (-) | False | si:ch73-204p21.2 |
| TU204662 | other | upstream | 908275 | 27912237 ~ 27912544 (-) | True | G172919 |
| TU205159 | other | upstream | 1832930 | 28836892 ~ 29050026 (-) | True | G173287 |
| XR_004578919.1 | other | upstream | 1896942 | 28900904 ~ 28908552 (-) | False | stmn4l |
