RNA id: XM_026926577.2



Basic Information


Item Value
RNA id XM_026926577.2
length 940
RNA type mRNA
GC content 0.41
exon number 8
gene id dnal1
representative True

Chromosome Information


Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24403823 ~ 24408782 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TCCCTGCCTGGGTTTCATGTTTACACTCCTCGAGCTGGACACCGAGTTTGCGCATGCGCGTTGTATGATGACCGTTCCATAGCAACCGCTGAGGCTAATATGGCAAAATCAACAACTATTAAAGAGGCTTTGGCGAAGTGGGAGGAGAAGTCAGGAGAAAAAGCAGGTGATGCCAAAGAAGTGAAGCTCTATGGCCAAATCCCTCCTATTGAAAAGATGGATGCATCTCTCTCCACCCTTACTAACTGCGAGAAACTGTCATTGTCAACTAACTGTATTGAAAAAATTGCCAACCTAAATGGATTAAAGAACCTCAAGATATTATCCTTGGGTCGTAACAACATCAAGAACCTTAATGGACTAGAGGCCATAGCAGACACATTGGAGGAACTGTGGATCTCCTACAATCTCATAGACAAGCTGAAGGGAATCCATGTGATGAAGAAGCTCCGTGTCCTGTACATGTCCAACAACTTGGTCAAAGAGTGGGCGGAGTTTGCGAAACTGGCAGAGCTTTCATCACTGGTAGACCTGGTCTTTGTGGGCAATCCTTTAGAAGAGAAGTACTCTGCTGAGGGCACCTGGATAGATGAGGCCACCAAGAGGGTCCCCAATCTGAAGAAGCTTGATGGGATCCCAGTGATTAagcaagaagaggaggagaaagaggcagaaagtTAATATGTTTACTGTGGTACAATTTTTATGACTTCACTACAATGTGTTAGCAATTAAGAGACTTTGTAGTATTTGCAGATTTTATATGTTGACTTGATGTTAATTTATACAGTTCTAACagctaataaaaatgtaaaaagtattaataaaaataaatagtaagaATAGTCTTACAGATAAGTTGATGCACTTCACCagtttcccaaaaaaaaaaaaaaaatccacaactTTATGGCATTATGTAGCTTTCTGTAGTTGTCAG

Function


GO: NA

KEGG:

id description
K10411 DNAL1; dynein light chain 1, axonemal

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202417 lncRNA downstream 119422 24284009 ~ 24284401 (-) True G171056
TU202385 lncRNA downstream 155808 24247685 ~ 24248015 (-) True G171028
TU202284 lncRNA downstream 368925 24034508 ~ 24034898 (-) True G170936
TU202233 lncRNA downstream 405112 23995566 ~ 23998711 (-) True G170887
TU202202 lncRNA downstream 484800 23918425 ~ 23919023 (-) True G170866
TU202554 lncRNA upstream 10149 24418931 ~ 24494790 (-) True G171160
TU202581 lncRNA upstream 59441 24468223 ~ 24469486 (-) True G171175
TU202589 lncRNA upstream 106127 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA upstream 119545 24528327 ~ 24528696 (-) True G171184
TU202651 lncRNA upstream 189493 24598275 ~ 24655253 (-) True G171232
XM_034307756.1 mRNA downstream 2264 24391053 ~ 24401559 (-) False tedc1
XM_026925988.2 mRNA downstream 2265 24391053 ~ 24401558 (-) False tedc1
XM_034307755.1 mRNA downstream 2265 24391053 ~ 24401558 (-) True tedc1
XM_026926645.2 mRNA downstream 23717 24364002 ~ 24380106 (-) True tmem121aa
XM_026926567.2 mRNA downstream 72728 24326943 ~ 24331095 (-) True ccdc28a
XM_026926039.2 mRNA upstream 22613 24431395 ~ 24440254 (-) True samd8
XM_034307735.1 mRNA upstream 22613 24431395 ~ 24438079 (-) False samd8
XM_026926889.2 mRNA upstream 35015 24443797 ~ 24449962 (-) True smndc1
XM_026926874.2 mRNA upstream 45619 24454401 ~ 24462936 (-) True tmem30b
XM_034308381.1 mRNA upstream 81456 24490238 ~ 24544079 (-) False luzp1
TU201673 other downstream 1540056 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2287947 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3586607 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3670771 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3838024 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 392301 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 850057 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 850057 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1170157 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3490709 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile