RNA id: XM_026926586.2


Basic Information

Item Value
RNA id XM_026926586.2
length 5032
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC113534026
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23869091 ~ 23876957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTGGGAGCTCCATTCAGAAAGTACTAGAATAGACTGCTACTTGAGACAGGCATGAAACGCAAGTCCGAGCATCTTTTGGTTGTGCAGTAACCGTTGATTGTAAATGACAAATCGTAAACAGAGGTTCACACTTTAAAGAAACACAAGTTTACAGAAAGTTTACAGACAGGAAGCTGGCTAATTAGCTAGCCAAGCCAGTGTACACATCATCACTTGCAGCAGCTCGGTGTTGCTTAGCCTCAGTGCGGTTTCATTTGCGTGTCTTTTGGTGCCCATCACCAAGATTTAGCCATAAAAATCGTCATTTTTCTCAATCACTTAAAAGTGAAATTAAGGAATGGCATTGGACTTTGCAGCAGGATGTATTGGAGGTGCTGCTGGTGTGTTGGTTGGACATCCTTTTGATACTGTTAAGGTGggttcaactttttttttaggttgCTCTAACCCAATTATAATCTAATATTTATGCCTGATATTGATTATCTGTTATTCTGTCACAGCAGAATATTCTAGTGGTGTGAACAAAGCTCCAGAATGAGCCTATAATAAGAACACGATATGTTCATAACCATGAAATGAAACTAGAACAACATTCTTCTTGtgtgtttactttaaaaaaaaacaacaactatcCATCACACAGGTTGGCTTGAGGTTCTGGTTGTGGGTTACCGTGTCACATGTGAGCATGCACTTGTGACATGCACTAGCTGAGCTCTTTTCATGTTTTGGCTCTGCAGTGTTTTGGTCTAGCAGTTATGTACTGTTTGTTCCAACCACAGATTAGATTTCCCGTTCATTTCTCGTTGTTTTGAATGCCCCTCTGAAGTATGACCTTTTTCACAGAACCTTGAATGCACGCACACATGTGAAAGACTCCCAGCTCTGGCTCGGAGCGTAACTGTACACTGGCTTGTGTGTGTCCTTTTTAAGGCACGATTAACGTTATTACAATCTTGATCTTGGAATATTAAGAATGATCTTTTCTTAATCATGTTAATCAAACAAAATACTACTAAATCAATTTAGACAGTAGatttctgtagaaaaaaagGGTAGGATATTGACAAGAACTCGGTTATACTGCTCCTTTCATCTGTCCTGTCATTCCATGTATGCATATGCTGGGGAAATATCATAATATCTGGGGATAAAATCattaacattcatttaaaacagtATTTGTCAAGATGTTAGGTCAGTATTATGGATTTGAAAGATAATGATAATAActttataatgaaatttaattgtTCTAGATTCTAACCGCCACAGAGAGTGGGTTCAGAGCTTTGAGATACAATGTGTTTCACAGCCGCTGTCctgctttttttcctgtgttcaTTGTAAACCCTGCTACAGGGGCTGTCTTTCACGGCATAAGTGTTACTTTGTTGTAGATGAGGGTGAGGGATTTACAACCCCTGCACGGATGGGTAACCTAGTAAGTACAGTCAAGGTGAGACTTCAGGTACAAAATGTGGACAAGCCCCTGTATCGCGGAACATACCATTGCTTCCAGTCTATTGTTCATCAAGAATCCATATTTGGGCTCTACAAAGGTATTGGGTCCCCAATGATGGGCCTGACTTTCATCAACGCCATTGTATTTGGTGTGCAGGGCAATGCAATGCGCATGCTGGGCAAAGATACCCCTCTTAACCAGTTTCTGGCAGGCGCTGCAGCCGGTGCTATCCAATGCGTCATTTGTTGCCCAATGGAACTAGCCAAGACTCGCATGCAGATGCAGGGCACAGGCGAGAAGAAGTCTTCCAAGAAGACATACAAGAACTCGTTGGACTGCTTAGTTCGCATCTACAAGAAAGAAGGCATTAGGGGAATCAACCGTGGCATGCTGACCACCATTATCCGTGAGACACCAGGATTTGGAGTGTATTTCCTGTCCTATGATGTCCTGACGCGTTCGCTGGGATGTGAAGCAGACGACCTCTACATCATTCCCAAGCTGCTCTTTGCAGGGGGCATGTCTGGGATTGCTTCCTGGTTATCCACCTATCCAGTGGATGTTATTAAGTCCCGCCTCCAGGCAGATGGCGTAGGTGGTGTTAATAAATACAGTGGAATTATGGACTGTGTCCGTCAGAGCTGGCAGAGGGAGGGCTGGAGGGTTTTTACTCGAGGTCTAACCTCTACTCTTCTCAGGGCTTTCCCTGTCAATGCTACCACGTTTGCCACAGTGACTCTGTTCCTCATGTATATGCGAAATGATGGAGGTGTGAAAGACTGTGAGCCTGAGCATCAGCCTGTACAGCAAACACAGCTCCAAACTACAAGCCTCTGATTGGATGCTCCAATCTCCTATTTGGGCTCTTCACCCAGAATAATTATTATACAGTGCCTGTATAATAATTTCAAAGAGATTTCCCTCTTGATGTATCCTGTTGGGAATTCTAGTTCCCTTATTATCAGTTATACTAGAAACAGTATCAGCAAAACTGTACCAGCTTTCAAAGTTTCATTTACAAGGAGTATCACTTTGTGTGGGAATTTTTTTATCAAGTTGACCCAAGGTTCTGAAAGAAACTCAAAGAATGTTTTGCTAAGTTTATCTCTACAGTGAGATAGGGTTAATGCTgctacgatttttttttttttttaaatgtcctcAGGATGTATGTTATAGTCCAGGAATTTGGATTGAATCAAGTTGGTATGGGGAAATTTGTGAACAAGCAAAATCGTTAATGCTATCCTGTATTAAAGCAACTGAAGGTCAAGGGGAGGGGGGCAAGTCCATTTCATGGAAAGACAGAAGGATAAGGGTCCAAAAAAGGATTACTCCGTAATTAGTATGTCCTTTGGCAGGAATGAcaaaaagatcttttttttaaaaaaaattgctgaatTGGTtatttatacactgtatggccaaaagtatgtgtacacctgaccatcacacctaccTGTGCTTGTTGTACATCCCATTctaaaaccatgggcattaatatggagttggtcccccccctttgcagctataacagactccactcttctgggaaggctttccactagattttggagcatgactggggggatttgtattcatttagccacaagagcattagtgaggtcaggcattgatgttgggAGAGGAGTGCACTCAGtcttccagttcatcccaaagctgttcattggggttgaaatcagggctctgtgcagcccactggagttcttccactccaacctccGCAAACTATGGCcccattcacacctggcattaacgtGCGTCCTGGTGAGcagatcacaagtggacagccgAGACACATAGCCGTTCACATCTGGCATTATGAATGCGTCTccagtgaccacttgtgatcgGATTTCATACATCACTTACGCTGGAGAGAAGCTGTCATGCACATTTATTATGTCAGTCTTCATCTGCGTTTATTTTCAAGCAGAAATGTCCcacaaattacatttacagGTACCTTTACAAGTCGTTATTATTACGTGGTCTGCAAATGAATCTTATAAATGATTAAGAGATAAGAAATGAAACTATGAAAAACAGTTGCTTTCATCTTTGTTGTTATAGTGTGACCTTTATCCATTAGCCTGGCGGTGGAGAGCTCTAATGTTCAGCACCATTTCCAAAGAGTCTTacaatgattacatattttccAACTAGGGCAAAGATGCAGTTGATTAGGCGGCCATTTGTTGCTCTCTGGGACGCCTCGAGACGCATTCgcattcacactacaaatgtgatGTGGCCATATGCATCCCACACCACCTCTGAATGTGATCAGAGTTTGAATGTTTGGATCACAATGTGCCTTCGAGACGCGTTTGACCCAGTTCACACCTGCACTTAGTTCTGACCACTTACGATCATTTCATAATGCCAGGTCTTTATGGACcttcgctttgtgcacaagggcactGTAATGCTAGAACAAGTTTGGCCTAAGCCCTTTAGTTACAGTAAAGTGAACACAGTttaaacaattgtgtgcttccaatatTGAGAAAGGCCCACATTAGGGTGTGATAtccaggtgttcacatacttttgacccTGTAGTACATCTGCAATGGAGTAATTCTGTCTATGTAGGAAAAGGTGCTGCTGAGCTTCTAAACAACTACATTTACTGACATTTGTTTTCAGCGTTGCTGTAGGTAGTGTATAGCTTTGATttcttgtctattttttttttcttccattgctATTGGCATTCCAAAGAAAGGATGGATTCTGATCTGACTCTATGCCTCAATGCCTTTAATATAGCATATTCACTTTCAGCTGCAGCTTAGACTGTGAACTGGTTCACCTCTCGTTTGctgaaaaatcatatttttttgtaaacagtTAAATCGAGTTATGTCAAGAGCAAAGCATAAATATTCATACAGTATTTCTGTACAGTACAAACTGTATATTTGCAGtgagaagaaataaataaaggaatacaTTAATAGTAATGTATATCTGTAAAGTAAATCACATCAGATGGATTGTTGGCTGAATTTATATGGCCATAAAAACTCCCATCTCTCCATAGCACTGTTAGTGTTACAGAAAGATCTGGTTAAGGGGAACACATCTCTATATCATTACACAGTACAAGAGATGATGTTTGAAATGCACCTTAATTATATCAATTATTCCcttaacttttattactttgttACCCGCTTAGAATACTGTTTATCAGCTTCTTAATTGCTGGTGCATTATTTTAGTACTgtagtattattttaaatagtatGTCTGGTTTCAATAACCTTAGAGAATCTCTGCAGTGATTTACCTACAGGCATGTGTTTAGTGGTTTTTGTTGTGCATccgaaagacaaaaaaatattttaacatttttaaaacaaaggtCTCGCATTCATGTGTATAATTAATCACAAGATCATTTTTTGATCATGCAGTTCTGTCTGTTTTTACATTGTCTTTTCTCACATGGAAAATGAAATTGTGAAAACTTTCTACTTTCATGATTGTACAAAATAGTATTTATTGATGAATTAAAGAGTAATGGAATTA

Function

GO: NA

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202111 lncRNA downstream 89857 23777979 ~ 23779234 (-) True G170788
TU202110 lncRNA downstream 89857 23778269 ~ 23779234 (-) False G170788
TU202129 lncRNA downstream 91780 23776555 ~ 23777311 (-) True G170805
TU202098 lncRNA downstream 124659 23720111 ~ 23744432 (-) True G170779
TU202118 lncRNA downstream 150322 23718545 ~ 23718769 (-) True G170795
TU202188 lncRNA upstream 17167 23894124 ~ 23894355 (-) True G170852
TU202202 lncRNA upstream 41468 23918425 ~ 23919023 (-) True G170866
TU202233 lncRNA upstream 118609 23995566 ~ 23998711 (-) True G170887
TU202284 lncRNA upstream 157551 24034508 ~ 24034898 (-) True G170936
TU202385 lncRNA upstream 370728 24247685 ~ 24248015 (-) True G171028
XM_026926409.2 mRNA downstream 32319 23827048 ~ 23836772 (-) True soul3
XM_026926410.2 mRNA downstream 32319 23829845 ~ 23836772 (-) False soul3
XM_026926704.2 mRNA downstream 76947 23780015 ~ 23792144 (-) True LOC113534104
XM_026926007.2 mRNA downstream 108831 23740019 ~ 23760260 (-) True ptpreb
XM_026926862.2 mRNA upstream 7798 23884755 ~ 23892639 (-) True wars1
XM_026925971.2 mRNA upstream 42181 23919138 ~ 23951036 (-) False LOC113533700
XM_026925973.2 mRNA upstream 42181 23919138 ~ 23950979 (-) False LOC113533700
XM_026925970.2 mRNA upstream 42181 23919138 ~ 23950979 (-) True LOC113533700
XM_026926229.2 mRNA upstream 126508 24003465 ~ 24028482 (-) True smyd2a
TU201673 other downstream 1005324 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 1753215 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3051875 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3136039 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3303292 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 924126 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 1381882 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 1381882 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1701982 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 4022534 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile